PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g43600.3.p
Common NameBRADI_2g43600, LOC100828596
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 414aa    MW: 45313.5 Da    PI: 8.2699
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g43600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.51.1e-083762227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      +++ C f++rt tC yG+ CkF H++
  Bradi2g43600.3.p 37 GEKDCAFYMRTRTCMYGEGCKFDHPQ 62
                      7889********************97 PP
2zf-CCCH28.72.3e-0986112127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++ C+ff++t  C + ++CkF+H++
  Bradi2g43600.3.p  86 PGEPDCPFFMKTRRCGFASKCKFNHPK 112
                       5789*********************96 PP
3zf-CCCH23.78.1e-08141161425
                       ---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                       e+C+ff + G Ck+G +CkF+H
  Bradi2g43600.3.p 141 EPCPFFPK-GKCKFGTNCKFSH 161
                       89******.************* PP
4zf-CCCH32.81.2e-10214240127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++ C+f+ +tG C yG++C+F+H++
  Bradi2g43600.3.p 214 PGEVDCSFYIKTGSCMYGSTCRFNHPE 240
                       57899********************96 PP
5zf-CCCH37.24.8e-12301325226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       ++  C+f+++tG+Ck+ ++CkF+H+
  Bradi2g43600.3.p 301 GETVCDFYMKTGFCKFSEKCKFHHP 325
                       6789********************9 PP
6zf-CCCH42.98.1e-14358381427
                       ---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                       e C+f+++tGtCk+G +CkF H+p
  Bradi2g43600.3.p 358 EVCSFYMKTGTCKFGVQCKFDHPP 381
                       78********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.4463563IPR000571Zinc finger, CCCH-type
SMARTSM003560.123562IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-53662IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-63762IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.23585113IPR000571Zinc finger, CCCH-type
SMARTSM003560.008385112IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-687112IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-590116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.873138164IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011138163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-5139162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-5141163IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-5141161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.192213241IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-5213240IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-7215240IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6217241IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4219240IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-7299326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371299327IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-7299327IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9301325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5304325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.403354382IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-7354381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6356383IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-6358381IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-11358381IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MGSHSTMGQS EALYSSNSMA KRPRVESSLP IYPQRPGEKD CAFYMRTRTC MYGEGCKFDH  60
PQWVPEGGIP NWKEAPKDEE SYPERPGEPD CPFFMKTRRC GFASKCKFNH PKEKVNVTVA  120
GTGNKGSQIS ESSISPVKPS EPCPFFPKGK CKFGTNCKFS HAKDIEVPSS GHESKSTATV  180
EAAGHNIAAS DSVSAKKLTP VAQEHNSKGM PIRPGEVDCS FYIKTGSCMY GSTCRFNHPE  240
RHHPVLDFPL VAPLGQSILP TSSVVPVEML NRATNFLPNF DFHATHVPIE PEPIAYPQRP  300
GETVCDFYMK TGFCKFSEKC KFHHPVDRSA SAPVASTEPR QKSVTLTLAG LPRREDAEVC  360
SFYMKTGTCK FGVQCKFDHP PPEEAIAKVS KQGAAEEKGG KKEAAGLSYV LGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g43600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569363.10.0zinc finger CCCH domain-containing protein 8 isoform X1
SwissprotQ5ZDJ60.0C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A0Q3ISB40.0A0A0Q3ISB4_BRADI; Uncharacterized protein
TrEMBLA0A0Q3R5J40.0A0A0Q3R5J4_BRADI; Uncharacterized protein
STRINGBRADI2G43600.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-135floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]