PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g38695.1.p
Common NameBRADI_2g38695
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 338aa    MW: 35561.4 Da    PI: 4.5821
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g38695.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.93.5e-201867251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      +i+++  rqv fskRr g++KKA+ELSvLC++e a ++fs+ gk + +++
  Bradi2g38695.1.p 18 PIQSNKARQVCFSKRRFGLFKKASELSVLCGVELAAVVFSPGGKAFSFCT 67
                      79999***************************************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-27968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.675969IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-241080IPR002100Transcription factor, MADS-box
CDDcd002652.57E-301076No hitNo description
PRINTSPR004046.8E-171131IPR002100Transcription factor, MADS-box
PfamPF003191.4E-231965IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-173146IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-174667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MPPRRRPSLG RQKVAMEPIQ SNKARQVCFS KRRFGLFKKA SELSVLCGVE LAAVVFSPGG  60
KAFSFCTPSV DAVVNRLLVN NNNNAAAPAA GGGGGWSSSA PAVATEGSSS SGLAPAAMAA  120
EKLVELTEAY AELRAMMERE KLRKERAEEE MEREREAAGC PTAAWLDADL AELSEAELVE  180
FQAALLEVKN AVDLHADDVL RETLTAAAAA PARSPLAMPM PRPRGFANSV YEVGGYSSGN  240
NNGGGFANSV YEVAGNNNGG GATMGEMMQM DNMLQQLNLI DQIHPLPPRM GQIPPPGLGF  300
PETMDLPPLP GMGFLDTMDL PSPDFGPDGG FIGPPPF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g38695.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754099.10.0agamous-like MADS-box protein AGL23
TrEMBLA0A0Q3KAM60.0A0A0Q3KAM6_BRADI; Uncharacterized protein
STRINGBRADI2G26320.12e-73(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.11e-23AGAMOUS-like 29