PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g38160.1.p
Common NameBRADI_2g38160, LOC100825285
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 1635aa    MW: 177406 Da    PI: 6.9508
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g38160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.7e-09757799347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT eE e + +  + +G++ +++I++ ++ ++t  +c+++++k+
  Bradi2g38160.1.p 757 PWTHEEKEVFMQMLATFGKN-FSKISNFLQ-HKTTADCVEFYYKH 799
                       8*****************99.*********.************97 PP
2Myb_DNA-binding21.94.1e-079681008345
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding    3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45  
                         WT +E  ++v+a + +G++ +++I++++   ++ +qck ++ 
  Bradi2g38160.1.p  968 DWTDDERSIFVEAMNIYGKD-FARISSRVK-SKSYEQCKVFFS 1008
                        6*****************99.********9.********8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-15740802IPR009057Homeodomain-like
PROSITE profilePS5129315.053753804IPR017884SANT domain
SMARTSM007171.1E-8754802IPR001005SANT/Myb domain
PfamPF002499.3E-7756799IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-7756801IPR009057Homeodomain-like
PROSITE profilePS5129314.159641015IPR017884SANT domain
SMARTSM007172.2E-69651013IPR001005SANT/Myb domain
SuperFamilySSF466895.15E-99681010IPR009057Homeodomain-like
PfamPF002491.3E-59681008IPR001005SANT/Myb domain
CDDcd001671.56E-59691007No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1635 aa     Download sequence    Send to blast
MPPPPPDRRD FLYRDGRRHD GGGAGGDHLP LPAPTPPRWR DSPYHPPPPP PPLRDHARPS  60
PRRTTSSVSS ETYYRQGAAA YERSYPDEPL GYTPSRSDRY WLEEDAGGYK GFSRYGGGGG  120
RREGRDMRGS YRRSPFRSYG GDFPRGHQEP PPPPLRRSPL RSVAVPISYD PPGDKADRED  180
REHHPRVTPW RPLRRRETRS DAADAAGAGP TSVRQNTGEG TASEKKAPAQ SLAVAAPQTS  240
EEEAPRKKPR LGWGQGLAKY EKQKVHGSAD PAEAVADGSS ADVEQKVDVG TPASVLCASP  300
VAASPPAPPS SSPDTDNKSC ELTTNTATVS NKDVPGAEVQ AYNDEIPIKL GQLDGDPIGS  360
LANVLAELLQ HDDSCSGDSR KLTNTSKLLL LKENITKEIE KTELEIDSLE CELKSANTDI  420
GNRALEDAQN PSPSSGTSKV PVRPEICETS SPLKEQGEIS PCKISVEQDT DAKGAESMEV  480
DTAPAYNVTA VSSEESVARP VVAETQVSVA ASVAPVKPSR GTGSQIDADS ERQGPSSCHD  540
NVNSMKADGS NQLSTRPCSH HVDTHNLIPS ILAVNNGMAK EFNELVFKPL PSDQPLSALG  600
PFSIQMKNDL SIKRKLAIHK NRLRFKEQTL TFKFKVLRHL WKEDVRLLCV RKQRPKSNKR  660
TDQSNRASQS GSQRQRSSNR SRLGIPAGNL STFPTSEISE VANKMFTEFQ FKRCRNYLKM  720
PAVIIDEKEK ACAMFVSKNG LIEDPVSVEK ERAVINPWTH EEKEVFMQML ATFGKNFSKI  780
SNFLQHKTTA DCVEFYYKHH KSDSFREVKK LLDRRQQQQP TSNYLGTKSG KKWNPEGNAA  840
SLDMLGAASV VAAHGLDYAN RVEKTSSKSI IRTSYRSDIS AVAKGSLDKD CVANVSLHER  900
ESVAADVLAG ICGTLSPEGM GSCITSSADP GQKMGGARME YLVTPEVDKS CDEEGTFSDQ  960
ECEVYSVDWT DDERSIFVEA MNIYGKDFAR ISSRVKSKSY EQCKVFFSKA RISLGLDMIH  1020
PRNADAGLPT SDTNGGRSDT DEACAAEIDS AICSTQSSQK MEIDACPAAD ETTQGCHVSG  1080
ITFIQSKTDR STEPVVGDIK FEEAENKAED RSCNILVDHE LLSEATRQAS QSCDPIDINS  1140
SANTKNVQNK VHGNQVTVHG NVAMSSSTEQ PVGSQLEIRS NLHDTEVIQS SKASAGTCTQ  1200
ISSMEGPSNH APEIALMKVG NFTPSVVLSG DCGSKENVVH FQDMAGVSCI RPAFTSSYQQ  1260
SVPADLLQSK PKPQVTPLTP KDLMPVQFSS DLPDPTSIRF EGIASITSPN FEDRANKVNN  1320
TSGAKDMNRF TVFGERSRNQ QDALFRDIDG YMQLRHNHHL PADVPALSES TVSCTGGTSH  1380
SDQFTSSKYQ NGRSGCSALS NASAGFPLTR NSAGLREGQL ETCSQKASTE SYDQVKRPGD  1440
VKLFGKILSH QSSLQSSGSS SNGIKSKPPS PNIDKSEARL LQSGRDRMVF PSRPANTAHL  1500
GLDEQSVMSY THLDGSPVHP DSMFRAANCQ RSLAGVPFYS AKNGTLGGFA EYQQPSMQQL  1560
PSDPKRESFA DLQKRNGIEL ISGFQQPGKA SRLGGAGIIV GAVSDPVAAL KAQYGPGPKI  1620
LGNNADPWKD LGNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C8e-15715806494NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D8e-15715806494NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g38160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231802.10.0uncharacterized protein LOC100825285
TrEMBLA0A0Q3KAE00.0A0A0Q3KAE0_BRADI; Uncharacterized protein
STRINGBRADI2G38160.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62993549
Representative plantOGRP32151725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.17e-76MYB family protein