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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g36740.1.p | ||||||||
Common Name | BRADI_2g36740, LOC100823250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 484aa MW: 50618.5 Da PI: 6.5566 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 52.8 | 7.2e-17 | 308 | 354 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L+el+P++ K +Ka++Le+A+eY+k Lq Bradi2g36740.1.p 308 VHNMSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 354 5*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.09E-20 | 302 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.4E-21 | 302 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.019 | 304 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.94E-18 | 307 | 358 | No hit | No description |
Pfam | PF00010 | 2.5E-14 | 308 | 354 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-17 | 310 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MLSGPGNDEL AELLWADDGP AFRRPPPLFP PFATTRPRPD LLAKHPAPLD AMRDLLAVQE 60 DEDAVPWLHY PIVGVDDDGG GHCAVPLPAE YCSPGLLPGY SGALPAAVAG KEAGDAHAQP 120 STSHGGAVGV PKQQPRPSGG ESVLNFTFFS RPLHRPPAPA PVESMSTAAV TTNRLRSTPL 180 FSEQRMAWLQ PPPPKVTTAA AAPAPPPPAP APVTLRHPEP APPLTRLQPE ARAPESAPAP 240 LPPAATATTS SVCSDNGDRS HQLKRSSHQA AAEWSLSQDD EDLDDEAGGL RRSAAGARST 300 KRGRTAEVHN MSERRRRDRI NEKMRALQEL IPNCNKIDKA SMLEEAIEYL KTLQLQVQMM 360 SSMGPAAAAA GLCVPPMLAM QMAPMGMGMG MGMAHFHHHH LGAMGFGMGA AFDPRLVAAA 420 AAAQFPCGPM PTFAFPGAPA MPSMPPFPQT APAAAAGAHF VINNASGGAQ PEQAPDNHPA 480 ASP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 312 | 317 | ERRRRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Atypical bHLH transcription factor that acts as negative regulator of grain size. Binds the transcription factor ILI6 and forms a heterodimer of antagonistic bHLH transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. May be involved in the control of lamina inclination through brassinosteroid signaling pathway. {ECO:0000269|PubMed:22363621}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g36740.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010231744.2 | 0.0 | transcription factor APG | ||||
Swissprot | Q6AT90 | 1e-69 | APG_ORYSJ; Transcription factor APG | ||||
TrEMBL | A0A0Q3G8E8 | 0.0 | A0A0Q3G8E8_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G36740.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3527 | 37 | 75 | Representative plant | OGRP258 | 16 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 4e-30 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g36740.1.p |
Entrez Gene | 100823250 |
Publications ? help Back to Top | |||
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