PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g33270.2.p
Common NameBRADI_2g33270, LOC100829393
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 385aa    MW: 41137.9 Da    PI: 6.9427
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g33270.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.3e-08116138426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       + C++f+++G Ck+Gd C  aHg
  Bradi2g33270.2.p 116 AACPDFRKGGACKRGDACEHAHG 138
                       78********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.08969101IPR000571Zinc finger, CCCH-type
SMARTSM003560.025112139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.136113140IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-6116138IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4118140IPR000571Zinc finger, CCCH-type
SMARTSM0035612148171IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.343148172IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MMMMGEGSAH APPWQRTAPS SGDGGCAADG VAAPYYALSA LRHYLPWNEP SGDAQDEEED  60
AVASADAYAC DEFRMYEFKV RRCTRGRSHD WTDCPFAHPG EKARRRDPRR YCYSGAACPD  120
FRKGGACKRG DACEHAHGVF ECWLHPARYR TQPCKDGTAC RRRVCFFAHT PEQLRSPPCS  180
PRAAAVSSSS PALADSYDGS PLRRQAFESC YLGGNGSGKS HLVQLSSSPT STLLSPPRSP  240
PSDSYSPPMS PNDVLASLRQ LRLGAPQSSP RSAGSFLAAA GYSSAFGSPK SPAAGIYSLP  300
STPTRPSSLV TVNTPSGATV TVEPIDLGLI VEEEPPVERV ESGRALRAKV FERLSKEATV  360
CNDTMEDVLA AAAPDVGWVS DLIN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g33270.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0961411e-122FP096141.1 Phyllostachys edulis cDNA clone: bphyem209h03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568774.10.0zinc finger CCCH domain-containing protein 35
SwissprotQ6L4N41e-148C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBLI1HL320.0I1HL32_BRADI; Uncharacterized protein
STRINGBRADI2G33270.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.15e-72C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]