PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g27040.2.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 368aa    MW: 40401.5 Da    PI: 7.9768
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g27040.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.12.9e-13136215190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fYn Y+ e+GF vr +ks+ + + +   +++ vCs++gk+ +e+ +         + rtgC+a +++ ++ d+ w+v + ++e nH+l+
  Bradi2g27040.2.p 136 DFYNLYSWEIGFGVRYAKSRLNVHRK-KCMQEIVCSCSGKPLKENMR---------SARTGCTALIRLLRSADNGWYVCEHREERNHPLS 215
                       6*****************99995555.77899********9997655.........9*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.6E-10136215IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MSVEAAASVL RSFPARYESL ENTSNGAVES VCTVEESVLG TRVDAERDWV SDGREEARGV  60
QNGVLETRHV DGRDEAEVPG WTQRASIGNA PEERKPNPNK QSALELSIRG YAERRSGVVV  120
APAVGTTFDS LQEAYDFYNL YSWEIGFGVR YAKSRLNVHR KKCMQEIVCS CSGKPLKENM  180
RSARTGCTAL IRLLRSADNG WYVCEHREER NHPLSNTCGE KLHWQSHRHI DPYTKELVRH  240
LRENNVSLGK VYSIIGSFFG SLENVPFTKR SLKTLCGKIS REQSDNDAGK IGHPVLSFSP  300
SCHTAAAAAS PPAPLPISEA SSAAAAAMAF EKIKVANPIV EMDSQIPLPL LRQIDLSRGH  360
GAVRLSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g27040.2.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231466.10.0uncharacterized protein LOC104582684 isoform X1
TrEMBLA0A2K2DAU50.0A0A2K2DAU5_BRADI; Uncharacterized protein
STRINGBRADI2G27040.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.19e-12FAR1-related sequence 6