PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g25400.1.p
Common NameBRADI_2g25400, LOC100836250
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 643aa    MW: 68255.7 Da    PI: 8.3744
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g25400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_142.91.1e-13170230363
                       XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       + +r+ r+++NRe+A+ sRqRKk ++eeLeekvk++ +   +L ++++ +  e a+l++++
  Bradi2g25400.1.p 170 DTRRAARLIRNRESAQLSRQRKKRYVEELEEKVKSMHSVINDLNSKISFIVAENATLRQQL 230
                       6799***********************************99******99999999998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.1E-15168232IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.036170233IPR004827Basic-leucine zipper domain
PfamPF001706.8E-12170230IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-12172230No hitNo description
Gene3DG3DSA:1.20.5.1703.2E-16172231No hitNo description
CDDcd147044.16E-20173224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0016021Cellular Componentintegral component of membrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MAEPALLDPS PFDLRHFPPY LFDTDLHLAG DDLPLENFAG GGDGCDDLDF DLPVDFSVED  60
FLLRSPDRGD SGEGSAAGSG PTGSSSSPAA SAADSVVAGG SCGVKHEESD EGRSGAAPNW  120
GLKRKQACPA VSSDAAKSRR SGDGEVSPSA SASRAAMESD DGGTVGEGED TRRAARLIRN  180
RESAQLSRQR KKRYVEELEE KVKSMHSVIN DLNSKISFIV AENATLRQQL SSGGGSCPPP  240
GVYPPAPMPG MHFPWVPGYA LRPHGSHVPL VPIPRLKPQQ SVSATKVTKK HENKKAVDSK  300
SKTKTKKVAS VSLIGLLLFV LLFGAFVPGF NHNFGMRGGS DSTMFRSFGH PPGRVLSFTN  360
HGKGTKGGSN NSDMIDVDSG MMMANGDSTE QKHAPNSSET LPALLYVPRN GKHVKINGNL  420
IIHSVLASEK AVAHTASKHN NGQSDIDHKE TSVAIARHLS LPGNNMKPQE KSPVDGPLPQ  480
WFREGMAGPI LNSGMCSEVF QFDISTASTN SGGVIPASPI VNSSSINATQ SIPTPPPAYL  540
GKLKNRRIMY NEAIPLTGKT VNNTEPFNRT SENSKLPDKK PSSSVVVSVL ADPREAGDGD  600
RDPRISTKSL SRIFVVVLLD GVRYVTYSCT LPFKSASPHL VN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269|PubMed:22050533, ECO:0000269|PubMed:22084314}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g25400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000269|PubMed:22084314}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568456.10.0bZIP transcription factor 39
SwissprotQ6AU900.0BZP39_ORYSJ; bZIP transcription factor 39
TrEMBLI1HJF80.0I1HJF8_BRADI; Uncharacterized protein
STRINGBRADI2G25400.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82283545
Representative plantOGRP21711628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40950.18e-85bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F
    A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response.
    Plant Cell Physiol., 2012. 53(1): p. 144-53
    [PMID:22084314]
  4. Ohta M, et al.
    Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants.
    J. Exp. Bot., 2013. 64(18): p. 5429-41
    [PMID:24153418]
  5. Cheng Q, et al.
    An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice.
    Plant Biol (Stuttg), 2015. 17(2): p. 419-29
    [PMID:25255693]