PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g22440.5.p
Common NameBRADI_2g22440
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 501aa    MW: 53597.7 Da    PI: 6.1838
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g22440.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.11.4e-31186243260
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       dDgynWrKYGqK++kgse+prsYY+C+ +gCp+kkkve++  d++v+ei+Y+g+Hnh+k
  Bradi2g22440.5.p 186 DDGYNWRKYGQKQMKGSENPRSYYKCSAPGCPTKKKVEQAP-DGHVTEIVYKGTHNHPK 243
                       8****************************************.***************85 PP
2WRKY106.81.1e-33348406159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+++d ++v++tYeg+Hnh+
  Bradi2g22440.5.p 348 LDDGYRWRKYGQKVVKGNPNPRSYYKCTMAGCPVRKHVERASQDLRAVVTTYEGKHNHD 406
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-28177244IPR003657WRKY domain
PROSITE profilePS5081123.525180244IPR003657WRKY domain
SuperFamilySSF1182902.09E-24182244IPR003657WRKY domain
SMARTSM007748.3E-34185243IPR003657WRKY domain
PfamPF031067.4E-25186242IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.7E-37333408IPR003657WRKY domain
SuperFamilySSF1182902.75E-29340408IPR003657WRKY domain
PROSITE profilePS5081137.895343408IPR003657WRKY domain
SMARTSM007741.4E-38348407IPR003657WRKY domain
PfamPF031067.7E-26349406IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MAMTPPSSLP PPSPSSYFNM SAGFLDSPVL LTPSLFPSPT TGAFPSQPFN WMGTQENDNS  60
GLQGSVKQDD QQRYSGFTFQ TTAPMSGTTS TAPASFLQSS MPMAQLGGDS YNREQQQPQQ  120
QQQPWSYQSD TVSMDVTTTR PADFTTPFDF EAAPDNMLGN NVASGGYSTA PAGTGVRAQS  180
GRRSSDDGYN WRKYGQKQMK GSENPRSYYK CSAPGCPTKK KVEQAPDGHV TEIVYKGTHN  240
HPKPLQNARR GSSSGSGALS SYAMQGAGGA SMNNEVPAAD ALSGTPENSS ASYGDDDANV  300
NGGEEFEVDE PESKRWRGGG EGAMAICGNR TVREPRVVVQ TISDIDILDD GYRWRKYGQK  360
VVKGNPNPRS YYKCTMAGCP VRKHVERASQ DLRAVVTTYE GKHNHDVPAA RGSAAAARYR  420
AAMPMPMPMP QAASGYLQQG HSSLRPDGFG AAAPTTQQTD GSTSSFALSG FGNAPPSYFN  480
YGNDAMYYAA AKDEPRDDDS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-36174409678Probable WRKY transcription factor 4
2lex_A7e-36174409678Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g22440.5.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1405541e-89AF140554.1 Avena sativa DNA-binding protein WRKY1 (wrky1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231268.10.0WRKY transcription factor WRKY24
SwissprotQ6B6R41e-131WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A0Q3IJ100.0A0A0Q3IJ10_BRADI; Uncharacterized protein
STRINGBRADI2G22440.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.12e-88WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]