PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g22230.1.p
Common NameBRADI_2g22230, LOC104583141
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 298aa    MW: 32486.4 Da    PI: 6.6344
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g22230.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY62.85.8e-20138199259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.STTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.dpkvveitYegeHnhe 59 
                       +Dg++WrKYG K++ ++ fpr YYrC ++   +Cp+kk v+++++ dp ++ +t  ++H+++
  Bradi2g22230.1.p 138 NDGFHWRKYGEKKILNAAFPRLYYRCGYSdehKCPAKKYVQQQDNgDPPLFMVTLINDHTCD 199
                       7**************************998899*******9876439************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.7E-21128199IPR003657WRKY domain
SuperFamilySSF1182901.83E-20132199IPR003657WRKY domain
SMARTSM007746.3E-31137200IPR003657WRKY domain
PROSITE profilePS5081115.273138201IPR003657WRKY domain
PfamPF031061.3E-21138199IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MATRRPKSEM SPLPEPTPAS DQRVDAVIEE LRKGAQLAEF LRQQVELIPE HGRRDAALAN  60
VSDISTALAS SLSVLQSERE QLYSPSSSSS DAGVAAHAAP AFGARNGPVA RARRAKHRRG  120
SHGQELPIKE ILTETPENDG FHWRKYGEKK ILNAAFPRLY YRCGYSDEHK CPAKKYVQQQ  180
DNGDPPLFMV TLINDHTCDA LFPAEQPPGS SSSSSANSQV LDFTKASISS PTMAAASAAV  240
PRLKKEEDVV AGMSVTTPSY TYDELSSSSL PLMSPMQWEM EMEMKSLFRR QDASSGS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g22230.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233189.20.0WRKY transcription factor 55
TrEMBLI1HIE70.0I1HIE7_BRADI; Uncharacterized protein
STRINGBRADI2G22230.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99932944
Representative plantOGRP1427144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.27e-18WRKY family protein