PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g21290.1.p
Common NameBRADI_2g21290, LOC100835219
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YC
Protein Properties Length: 279aa    MW: 30863.5 Da    PI: 5.1688
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g21290.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC60.33.9e-196861898
             NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                      ++++P  rikki++adedv +i+  +Pvl+ska elf+ +l  r+++ + ++  +t+  s +++++ + d++dfl ++v +
  Bradi2g21290.1.p  6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYNITVQKGVKTVSSSHLKQCIHSYDVYDFLKNVVNK 86
                      5789************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.5E-25372IPR009072Histone-fold
SuperFamilySSF471131.41E-20488IPR009072Histone-fold
PfamPF008089.4E-18871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YNITVQKGVK  60
TVSSSHLKQC IHSYDVYDFL KNVVNKVPDL GAPDTSADDK LGKRRKHAED ESEEESKRTR  120
NEVASHASNG RGRGRGRGRG RRGGRGAERE TEYHELAPCE SKPVNLKVEI GDVGSDTIET  180
KEPTPLSNAR ASLRNIDLNL DLDEYEDTVA QFQPEAPVAS VAAPSAGPSV SQSIEDVKTK  240
DFLGWQLPEM SKMGMDPVQF ALSSDHRLEV DEDYDNEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A4e-22271574Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130139RGRGRGRGRG
2130140RGRGRGRGRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g21290.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568199.10.0dr1-associated corepressor
TrEMBLI1HI490.0I1HI49_BRADI; Uncharacterized protein
STRINGBRADI2G21290.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21723679
Representative plantOGRP21791635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-51nuclear factor Y, subunit C11