PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g20060.3.p | ||||||||
Common Name | BRADI_2g20060, LOC100833785 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | TCP | ||||||||
Protein Properties | Length: 299aa MW: 31560 Da PI: 6.5091 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 91.6 | 1.7e-28 | 50 | 117 | 3 | 70 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +a ++i++l+ ++++++ Bradi2g20060.3.p 50 GGKDRHSKVRTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDAARREIDKLPPLNFPPP 117 78*************************************************************88887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.0E-26 | 51 | 111 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 29.231 | 51 | 109 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MHTNEEPGPD GAANKALLQL HQAASSAASS SSSRQWSAES RIVRVSRVFG GKDRHSKVRT 60 VKGLRDRRVR LSVPTAIQLY DLQDRLGLSQ PSKVVDWLLD AARREIDKLP PLNFPPPDPH 120 AHLMAMAPPP FSATTAAPML VDGDKAAGQL GRCDDGDELK GFMGLRSSLG LVSGAMTPSA 180 LAAHASPYHH QYGAGAEAWS NDAHDYLSGG GRGHNGTDSI QQVATAHGHG HSPYFPSLLS 240 LAPAMSQFVF YSAAEGGFGS AMKEAGDGDD DDQFPVDNLD ASQGQLSLSS DRSFLHSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-19 | 56 | 110 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-19 | 56 | 110 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g20060.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK359359 | 6e-75 | AK359359.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1095A23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566051.1 | 0.0 | transcription factor PCF6 | ||||
Refseq | XP_010231175.1 | 0.0 | transcription factor PCF6 | ||||
TrEMBL | I1HHQ1 | 0.0 | I1HHQ1_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G20060.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 4e-36 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g20060.3.p |
Entrez Gene | 100833785 |