PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g19610.15.p
Common NameBRADI_2g19610, LOC100827663
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HB-PHD
Protein Properties Length: 939aa    MW: 103098 Da    PI: 4.6507
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g19610.15.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox39.11.3e-12748800456
                        -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        R++f +   ++L e+F+ ++yp+++ +e LA++lgLt +qV+ WF  rR+k +
  Bradi2g19610.15.p 748 RRQFGPIIYQRLHEHFKTDQYPKRAVKESLANELGLTFQQVSKWFETRRYKTR 800
                        7778888889*****************************************87 PP
2PHD409.2e-14226281151
                        SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                        +C+ C++   + +++++lCdg C++ fH+kCl+++l ++++p g   wlC+ C++k
  Bradi2g19610.15.p 226 ICATCSSqyVTLNNDIILCDGvCDRGFHQKCLNPPLLTKDIPAGdeGWLCPACDCK 281
                        6******87667********77********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.28E-12220284IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.3E-12223280IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.923224281IPR019787Zinc finger, PHD-finger
SMARTSM002492.0E-10226279IPR001965Zinc finger, PHD-type
PfamPF006281.2E-10226281IPR019787Zinc finger, PHD-finger
CDDcd155049.61E-24227278No hitNo description
PROSITE patternPS013590227278IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007114.107742802IPR001356Homeobox domain
SMARTSM003894.3E-10744806IPR001356Homeobox domain
SuperFamilySSF466897.7E-12747807IPR009057Homeodomain-like
CDDcd000863.31E-11747800No hitNo description
PfamPF000464.5E-10748800IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.6E-12748807IPR009057Homeodomain-like
PROSITE patternPS000270777800IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 939 aa     Download sequence    Send to blast
MDMNKGTGSG CAEDNVETGN YANSSQNPET LDNQSLPYTS QSLENNTGQR KNYKRTANRG  60
RKGYRVLADR NYPLRSSDCD TTVRVLRSRS AANKPPSDSA HTLVHSAANK FPSDSVHTLV  120
QPAAKRIKRG RPTKKGPNNE FSKIRQRVRY ILNRMNYEQS LLEAYANEGW KRQRPEKELE  180
RAKEEIVRCK LRIREAFQNL DSLLSMGKLD ESLFDNEGKI SCEDIICATC SSQYVTLNND  240
IILCDGVCDR GFHQKCLNPP LLTKDIPAGD EGWLCPACDC KIDCIDVINE LQGTNLSISD  300
SWEKVFPETA ALAHGTIPKD AFDLPSEDSE DSDFDPNIAE EHVTGHEEGS SEEDEDEGSD  360
SDDSNFVTTC DNSEHLKEKE KVDDLGLPSE DSEDDDYDPA GPDSDKDIKE KQDESDFTSD  420
SDDFCAEIAK SCGRDEVSSG AKVGDPTNDL EGATACSNTA IPNLTSNDLE IDQDEVLPVL  480
GRRQGQRLDY KKLYDDAYGE APSDSSDGEE WSGKSTSEKG DEERNEVDSF LRKSSRGTGT  540
VQQSNDFLPQ SARQSLDPDG LVNGQHPGKL TSDVSNNKTN RKPLNNKEEV DDLGLPSEDS  600
EDDDYDPAGP DSDKDIEKKQ SSSNESDYSS ASDDFCGEIA KSCGREGVPS GAKAVSGRRQ  660
DQSLDCKKLY DEACREASSD SSDGEDWSGK CTPEKDSEKQ SDTCRRTGAV RQSNGSTPDN  720
ARQSLHRTNG QHTEELLTSD GSSSTVHRRQ FGPIIYQRLH EHFKTDQYPK RAVKESLANE  780
LGLTFQQVSK WFETRRYKTR IAAKKNDSCV KNHSIKENQS SVAAHIEATD PKDLGKKLNV  840
CKNGAANDVM ASGILNGGIK QDSPLKQDTS GGLGTHVSPP GSSPKGDPIE NHGNNTSSRC  900
VGKPKDGYTG NVVLALPVVD DRTKEAAMRE LKKRKTGS*
Functional Description ? help Back to Top
Source Description
UniProtInteracts with the shrunken (SHR) 26 bp feedback control element.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g19610.15.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231157.10.0homeobox protein HOX1A isoform X1
RefseqXP_014754573.10.0homeobox protein HOX1A isoform X1
SwissprotP466051e-180HOX1A_MAIZE; Homeobox protein HOX1A
TrEMBLA0A2K2D9E20.0A0A2K2D9E2_BRADI; Uncharacterized protein
STRINGBRADI2G19610.20.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.15e-73Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Bellmann R,Werr W
    Zmhox1a, the product of a novel maize homeobox gene, interacts with the Shrunken 26 bp feedback control element.
    EMBO J., 1992. 11(9): p. 3367-74
    [PMID:1354614]