PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g16780.2.p
Common NameBRADI_2g16780, LOC100826225
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 356aa    MW: 37908.4 Da    PI: 10.5011
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g16780.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.92.6e-1342128186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W++ e+ aL++a  ++  +l+rg+l++++W+ev++++       ++r   r+ +qCk++ + l+k+yk+++ +         s +++fd+l+
  Bradi2g16780.2.p  42 CWSEGETAALVDAWGSRYVELNRGNLRQKQWQEVANAVnsrrgaaARRRPPRTDVQCKNRVDTLKKKYKAERVRGAP------SGWSFFDELD 128
                       7******************************************99999999******************99877765......4699999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.1E-2640130No hitNo description
Gene3DG3DSA:1.10.10.605.9E-441112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEVREMAAAA AAAAAGGGGG GGGGGFGRLP PPNPNLPYRE DCWSEGETAA LVDAWGSRYV  60
ELNRGNLRQK QWQEVANAVN SRRGAAARRR PPRTDVQCKN RVDTLKKKYK AERVRGAPSG  120
WSFFDELDRL VGPTLNSAAN KRPSPAMAPH LALPVHPSST AARKYPSPSS SPSPPPPMAL  180
PLPSYRRGAL LPAAAFIQQE AAAAAAAVSD SEDSGDHPGG NNNNNHHDNL RRSPSRSVSS  240
ARSGGSNKRP FRREAGGDGD SGVSELARAI EAFAEMYERV ESAKQKHSLE MERERIDFLK  300
QLEVKRMENF VDAHVKLARV KRTKKSGGAA SNGAGGVELI SSVAALPFLS NSNYL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g16780.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014755186.10.0trihelix transcription factor ASIL2
RefseqXP_014755187.10.0trihelix transcription factor ASIL2
TrEMBLA0A0Q3MKS50.0A0A0Q3MKS5_BRADI; Uncharacterized protein
STRINGBRADI2G16780.11e-157(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-29sequence-specific DNA binding transcription factors