PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g13560.1.p
Common NameBRADI_2g13560
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 185aa    MW: 20486.3 Da    PI: 10.5298
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g13560.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS42.79.3e-14195112214
              GRAS 112 vHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEal 202
                       +Hi+D++ +  lQW++Ll a ++ p+ +p  lR+Tg+g     s   l+++g++La +A++l++pfe  +++a   +      L  k+ +Ea+
  Bradi2g13560.1.p   1 MHIVDLN-GGALQWLSLLSARTAPPSCSPaLLRVTGFGV----SVALLHNVGNQLAGLASKLDMPFELCAVAAAVSSG---LLLPGKRhREAV 85 
                       6*****8.557*********99998655549********....9**************************73332222...34555556**** PP

              GRAS 203 aVnlvlqlhrll 214
                       aV++    h+++
  Bradi2g13560.1.p  86 AVHWLC--HTMY 95 
                       ***998..4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035143.0E-11195IPR005202Transcription factor GRAS
PROSITE profilePS5098511.3371184IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MHIVDLNGGA LQWLSLLSAR TAPPSCSPAL LRVTGFGVSV ALLHNVGNQL AGLASKLDMP  60
FELCAVAAAV SSGLLLPGKR HREAVAVHWL CHTMYDAAWD EDAALRWSPG SRRWWTKWRG  120
CPEEKERGSQ GSRRSGVRLR WRRRKNRGER RELGERKAQG EEGQRGSDLW VPPVRSCLTS  180
PNED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-121107130236Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g13560.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566122.21e-37protein SCARECROW 2
TrEMBLI1HFJ51e-129I1HFJ5_BRADI; Uncharacterized protein
STRINGBRADI2G13560.11e-130(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.16e-13GRAS family protein