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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g13560.1.p | ||||||||
Common Name | BRADI_2g13560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GRAS | ||||||||
Protein Properties | Length: 185aa MW: 20486.3 Da PI: 10.5298 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 42.7 | 9.3e-14 | 1 | 95 | 112 | 214 |
GRAS 112 vHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEal 202 +Hi+D++ + lQW++Ll a ++ p+ +p lR+Tg+g s l+++g++La +A++l++pfe +++a + L k+ +Ea+ Bradi2g13560.1.p 1 MHIVDLN-GGALQWLSLLSARTAPPSCSPaLLRVTGFGV----SVALLHNVGNQLAGLASKLDMPFELCAVAAAVSSG---LLLPGKRhREAV 85 6*****8.557*********99998655549********....9**************************73332222...34555556**** PP GRAS 203 aVnlvlqlhrll 214 aV++ h+++ Bradi2g13560.1.p 86 AVHWLC--HTMY 95 ***998..4444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 3.0E-11 | 1 | 95 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 11.337 | 1 | 184 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MHIVDLNGGA LQWLSLLSAR TAPPSCSPAL LRVTGFGVSV ALLHNVGNQL AGLASKLDMP 60 FELCAVAAAV SSGLLLPGKR HREAVAVHWL CHTMYDAAWD EDAALRWSPG SRRWWTKWRG 120 CPEEKERGSQ GSRRSGVRLR WRRRKNRGER RELGERKAQG EEGQRGSDLW VPPVRSCLTS 180 PNED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-12 | 1 | 107 | 130 | 236 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g13560.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566122.2 | 1e-37 | protein SCARECROW 2 | ||||
TrEMBL | I1HFJ5 | 1e-129 | I1HFJ5_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G13560.1 | 1e-130 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 6e-13 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g13560.1.p |