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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g12490.1.p | ||||||||
Common Name | BRADI_2g12490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 117aa MW: 13288.7 Da PI: 12.1331 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 18.8 | 3e-06 | 48 | 99 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC.......TTS-STCH.HHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkas....kapskKlsKa.eiLekAveYIksLq 55 rrR + i+ ++ Lr+l+P as + ++ + s e L + +YI sLq Bradi2g12490.1.p 48 RRRRLEVIRRKIRALRTLVPRASngelQDRQDRHSRLdELLLHSADYILSLQ 99 59*******************999***555555555527899********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.994 | 39 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.41E-7 | 46 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-6 | 49 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 117 aa Download sequence Send to blast |
MAARAASSCC RVAAARRFLL ARKKKALEAG TRKKLAGAKQ KQGMPTSRRR RLEVIRRKIR 60 ALRTLVPRAS NGELQDRQDR HSRLDELLLH SADYILSLQM QVQVMQFMVH VLNPKD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 31 | 50 | RKKLAGAKQKQGMPTSRRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g12490.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025819435.1 | 2e-20 | uncharacterized protein LOC112895669 | ||||
TrEMBL | I1HF55 | 6e-77 | I1HF55_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G12490.1 | 1e-77 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9111 | 21 | 26 | Representative plant | OGRP15974 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g12490.1.p |