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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g11240.4.p | ||||||||
Common Name | BRADI_2g11240, LOC100824494 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | SBP | ||||||||
Protein Properties | Length: 885aa MW: 98135.1 Da PI: 7.9131 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 120.7 | 6.8e-38 | 132 | 207 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC+adl + ++yh+rhkvCevh+k++vv ++ +e+rfCqqCsrfh l efDe+k+sCr+rLakhn rrrk+ Bradi2g11240.4.p 132 CQVDGCHADLRDSRDYHKRHKVCEVHTKSTVVRIKSIEHRFCQQCSRFHLLPEFDEGKKSCRSRLAKHNGRRRKAP 207 *************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.5E-30 | 126 | 193 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.846 | 129 | 206 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.01E-35 | 130 | 209 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.6E-28 | 132 | 205 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:1.25.40.20 | 1.4E-5 | 615 | 760 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 5.15E-6 | 615 | 761 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.03E-4 | 659 | 760 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 885 aa Download sequence Send to blast |
MEAGFRREGG QTGLANTMSS ELSKNKKKKG LEWDLNDWRW DGNLFLATPS SNAVAAPSGC 60 GSRELGRSED GIDLSVADKR RRVSPVDNHG ECSNAAIANG DHDRVVGRRG QSSREGRHAN 120 ATGAYSTSAP YCQVDGCHAD LRDSRDYHKR HKVCEVHTKS TVVRIKSIEH RFCQQCSRFH 180 LLPEFDEGKK SCRSRLAKHN GRRRKAPAQA GAAGNTSSEN QSLTNTLLLL LKQLSGQDPG 240 SSSEQSNGPN FLVNLLKNLA AIAGTQAYQD MLKNANSASI SSNDANYVVN GFTNEPTRSP 300 IPVGTESSAV KQHVQNFDLN DAYVEEDESR TDKIVFKLFG KEPKDFPVDL RAQMLNWLSH 360 YPSDMESHIR PGCVILTIYL RLPNWMWDKL KVNPAPWIEN LISISTDGFW ETGWLYTRLQ 420 DRLALSCNGR LMLVSPWQPL IGDKHQILCV TPIATACSST ANFSVKGFNI VQPTTKLLCI 480 FGGEYLIQEA TQMLHEDTMM QQGPQCLTFS CSFPSMSGRG FIEVEDYDQS SLSFPIVVAE 540 ESLCSEIRML EDKLNLIAFG DILEGREDLM ASRDQALNFL QEIGWFLQRS HKRATTDAPQ 600 YCTESFPVAR FRWLLSFAID QEWCSVVKKL LDTLFQGNID VDVRSPFEFV LGEGLVFTAV 660 NKRAKRLVEF LLRYTTNSAL VARGAVSPVR FLFTPDITGS SNITPLHIAA SMSDGAGVLD 720 ALTDDPQQLG IKAWKHARDT TGYTPEDYAQ KRGHISYIQM VENKINSRLP KAHVSVSMTI 780 SPSTTDISEK HAGRSKSTNQ TTLDIEKSQR SDKRPPSCRQ CVQLQHIAYH PRPNRFLSNR 840 PAVLSLVAIG AVCVCVGLIM QSPPTVGVGM TGPFLWSSLN YGPI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-26 | 126 | 205 | 5 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 82 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g11240.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010230803.1 | 0.0 | squamosa promoter-binding-like protein 1 isoform X2 | ||||
Swissprot | Q9LGU7 | 0.0 | SPL1_ORYSJ; Squamosa promoter-binding-like protein 1 | ||||
TrEMBL | A0A2K2D7Y7 | 0.0 | A0A2K2D7Y7_BRADI; Uncharacterized protein | ||||
STRING | MLOC_34539.4 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47070.1 | 1e-179 | squamosa promoter binding protein-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g11240.4.p |
Entrez Gene | 100824494 |
Publications ? help Back to Top | |||
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