PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

SBP

Protein Properties

Length: 888aa MW: 98502.5 Da PI: 7.8226

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g11240.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	120.7	6.8e-38	132	207	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv+gC+adl + ++yh+rhkvCevh+k++vv ++ +e+rfCqqCsrfh l efDe+k+sCr+rLakhn rrrk+ Bradi2g11240.3.p 132 CQVDGCHADLRDSRDYHKRHKVCEVHTKSTVVRIKSIEHRFCQQCSRFHLLPEFDEGKKSCRSRLAKHNGRRRKAP 207 *************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.5E-30	126	193	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.846	129	206	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.14E-35	130	209	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.6E-28	132	205	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	5.15E-6	618	764	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.4E-5	618	763	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.03E-4	662	763	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 888 aa Download sequence Send to blast
MEAGFRREGG QTGLANTMSS ELSKNKKKKG LEWDLNDWRW DGNLFLATPS SNAVAAPSGC 60 GSRELGRSED GIDLSVADKR RRVSPVDNHG ECSNAAIANG DHDRVVGRRG QSSREGRHAN 120 ATGAYSTSAP YCQVDGCHAD LRDSRDYHKR HKVCEVHTKS TVVRIKSIEH RFCQQCSRFH 180 LLPEFDEGKK SCRSRLAKHN GRRRKAPAQA GAAGNTSSEN QSLTNTLLLL LKQLSGQDPG 240 SSSEQSNGPN FLVNLLKNLA AIAGTQAYQD MLKNANSASI SSNDANYVVN GFTNEPTRSP 300 IPVGTESSAE HTVKQHVQNF DLNDAYVEED ESRTDKIVFK LFGKEPKDFP VDLRAQMLNW 360 LSHYPSDMES HIRPGCVILT IYLRLPNWMW DKLKVNPAPW IENLISISTD GFWETGWLYT 420 RLQDRLALSC NGRLMLVSPW QPLIGDKHQI LCVTPIATAC SSTANFSVKG FNIVQPTTKL 480 LCIFGGEYLI QEATQMLHED TMMQQGPQCL TFSCSFPSMS GRGFIEVEDY DQSSLSFPIV 540 VAEESLCSEI RMLEDKLNLI AFGDILEGRE DLMASRDQAL NFLQEIGWFL QRSHKRATTD 600 APQYCTESFP VARFRWLLSF AIDQEWCSVV KKLLDTLFQG NIDVDVRSPF EFVLGEGLVF 660 TAVNKRAKRL VEFLLRYTTN SALVARGAVS PVRFLFTPDI TGSSNITPLH IAASMSDGAG 720 VLDALTDDPQ QLGIKAWKHA RDTTGYTPED YAQKRGHISY IQMVENKINS RLPKAHVSVS 780 MTISPSTTDI SEKHAGRSKS TNQTTLDIEK SQRSDKRPPS CRQCVQLQHI AYHPRPNRFL 840 SNRPAVLSLV AIGAVCVCVG LIMQSPPTVG VGMTGPFLWS SLNYGPI*

Sequence ? help Back to Top

Protein Sequence Length: 888 aa Download sequence Send to blast

MEAGFRREGG QTGLANTMSS ELSKNKKKKG LEWDLNDWRW DGNLFLATPS SNAVAAPSGC  60
GSRELGRSED GIDLSVADKR RRVSPVDNHG ECSNAAIANG DHDRVVGRRG QSSREGRHAN  120
ATGAYSTSAP YCQVDGCHAD LRDSRDYHKR HKVCEVHTKS TVVRIKSIEH RFCQQCSRFH  180
LLPEFDEGKK SCRSRLAKHN GRRRKAPAQA GAAGNTSSEN QSLTNTLLLL LKQLSGQDPG  240
SSSEQSNGPN FLVNLLKNLA AIAGTQAYQD MLKNANSASI SSNDANYVVN GFTNEPTRSP  300
IPVGTESSAE HTVKQHVQNF DLNDAYVEED ESRTDKIVFK LFGKEPKDFP VDLRAQMLNW  360
LSHYPSDMES HIRPGCVILT IYLRLPNWMW DKLKVNPAPW IENLISISTD GFWETGWLYT  420
RLQDRLALSC NGRLMLVSPW QPLIGDKHQI LCVTPIATAC SSTANFSVKG FNIVQPTTKL  480
LCIFGGEYLI QEATQMLHED TMMQQGPQCL TFSCSFPSMS GRGFIEVEDY DQSSLSFPIV  540
VAEESLCSEI RMLEDKLNLI AFGDILEGRE DLMASRDQAL NFLQEIGWFL QRSHKRATTD  600
APQYCTESFP VARFRWLLSF AIDQEWCSVV KKLLDTLFQG NIDVDVRSPF EFVLGEGLVF  660
TAVNKRAKRL VEFLLRYTTN SALVARGAVS PVRFLFTPDI TGSSNITPLH IAASMSDGAG  720
VLDALTDDPQ QLGIKAWKHA RDTTGYTPED YAQKRGHISY IQMVENKINS RLPKAHVSVS  780
MTISPSTTDI SEKHAGRSKS TNQTTLDIEK SQRSDKRPPS CRQCVQLQHI AYHPRPNRFL  840
SNRPAVLSLV AIGAVCVCVG LIMQSPPTVG VGMTGPFLWS SLNYGPI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-26	126	205	5	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	82	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g11240.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003567564.1	0.0	squamosa promoter-binding-like protein 1 isoform X1
Swissprot	Q9LGU7	0.0	SPL1_ORYSJ; Squamosa promoter-binding-like protein 1
TrEMBL	A0A0Q3FX42	0.0	A0A0Q3FX42_BRADI; Uncharacterized protein
STRING	MLOC_34539.4	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	1e-180	squamosa promoter binding protein-like 1

Link Out ? help Back to Top
Phytozome	Bradi2g11240.3.p
Entrez Gene	100824494

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang H,Zhai J,Mo J,Li D,Song F Overexpression of rice sphingosine-1-phoshpate lyase gene OsSPL1 in transgenic tobacco reduces salt and oxidative stress tolerance. J Integr Plant Biol, 2012. 54(9): p. 652-62 [PMID:22889013] Zhang H, et al. Molecular characterization of rice sphingosine-1-phosphate lyase gene OsSPL1 and functional analysis of its role in disease resistance response. Plant Cell Rep., 2014. 33(10): p. 1745-56 [PMID:25113543]