PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g09434.1.p
Common NameBRADI_2g09434
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 1357aa    MW: 150697 Da    PI: 6.1101
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g09434.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.51.4e-123382252
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkk 52
                       y+GVr ++ +gr++AeIr p++  k+     +lg+++t+eeAa+a+++a  +
  Bradi2g09434.1.p 33 SYHGVRKRP-SGRYAAEIRNPYK--KTplIPLRLGTYDTPEEAARAYDRASWE 82
                      79*******.7*********765..24789******************99655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.71E-243294No hitNo description
PfamPF008472.0E-73281IPR001471AP2/ERF domain
SMARTSM003804.7E-233399IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-223394IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-163395IPR016177DNA-binding domain
PROSITE profilePS5103219.5853393IPR001471AP2/ERF domain
PRINTSPR003671.4E-73445IPR001471AP2/ERF domain
PRINTSPR003671.4E-77595IPR001471AP2/ERF domain
CDDcd147982.35E-13426541No hitNo description
SuperFamilySSF525405.03E-50596856IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009315.8E-51602882IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3006.2E-15606756IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003643.3E-9619634No hitNo description
PRINTSPR003643.3E-9691705No hitNo description
PRINTSPR003643.3E-9789803No hitNo description
SuperFamilySSF520583.09E-149211285IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.106.9E-69701080IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.106.9E-611861231IPR032675Leucine-rich repeat domain, L domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1357 aa     Download sequence    Send to blast
MGSSSGEDSP AARFKAPAKE KQVAVAGRQE VPSYHGVRKR PSGRYAAEIR NPYKKTPLIP  60
LRLGTYDTPE EAARAYDRAS WEFRGKSARL NFPDEVTAAA APATEDLSGK LPNERRGKSS  120
RLNFPDEVTS AAALATERRS GKLKLPNKIA TQWSSSDGGS GSESESDTEA LDFADEPRLP  180
SQGKGSAEEN FIDLLDGFVF LAPACEVSLS EESSLVSTQT LGNPEGTAEI EKDSSSFWAY  240
PPIQNPERTV LRPRWPTRRR RRRTRSAVTL SSEQSAQGSY YFQETTAAEM LLGLSTVGSP  300
RLNFPEEITT TLAPSSEGTL SPNWLPDWLA PLNIPVPGEE CLDFCTELAL SSCEGGGSRS  360
DALQVQAAGT MDVPPQGAAS IIQNNATEDC PQLPLQPGGE EEEHHQQQLY PWLVSPPPTS  420
SHYCAALGAM GSLLRNLHTE LHGSGSLPKM VKERMQLLKD DLEEIGAYLE DLSEVEDPPL  480
TAKCWMKEVR ELTYDVEDYM NKSVLRQPVV VRATASAKIK SGGKPVAKAR HVKITRLPRR  540
VNRPHRIADM LSEFRVFVRE AIERHERYDL GCRSLRRRFV SVGPVLPMTY DEAADIVIDG  600
RMSKFITSLA NDGDQQLKVA SLVGSECLGK TTLARVFYEK FGAQCDCRAF VRVSRKADMK  660
RVFRDILWQV QRQQPPEDCK QHELTDSIKK HLQDKRYLLV IDDLWDASVW DIISDACPKG  720
NNQRSRIITT TRNEDVALSC CCDLSEYVFE MKPLDDYHSR KLFFGRVFGS ESDCPQQFKE  780
VSDEIVGICG GLPLAIISIA SLLASQTVIL MDLLMHIRDS LTTCLWANST SEGMRQVLNL  840
SYNNLPQYLK TCLLYFSMYP LGRTICKDDL VKQWVAEGFI NAAEGKDMEK VAASYFDELV  900
QRKFLQPLCM NHNNEVLSCT VHDMLHDLIA HKSAEENFIM VTDYHQKNMA LSDNVHRLSL  960
HFGDAKYAKI PENIRTSQVR SVTFSGLSKC MPSVAELRLV RVLNIELSGH HGDDRIDLTG  1020
ISELFQLTYL KVASACDVCI ELPNHMKGLQ CLETLDMNAK VSAVPLDIIH LPRLLHLHLP  1080
VETSVQFDWI GSTGSVSPGS PGKLINLRDI RLTCSVPPSD HLERNMEALC SLLGGHDNLK  1140
TLAMVPIATC RNDFLRADSA SEVTTISWDG LTPPLHLQRF EWLPCSCILS RVPKWIGELG  1200
SLCILKIAIE TLSMDDVANL QGLSALTVVS LYVRERVAER IVFGKAGFSA LKYFKFRCSV  1260
PWLKFEADAM PNLQILKLGF NAPTVDRQDT AHISIERLSG LNEITVKIGG AGADSESTLM  1320
DTVSNHQSNP KIKVQLVDWV FYGEYGSDKG TDECHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C4e-39452118028744Disease resistance RPP13-like protein 4
6j5t_F4e-39452118028744Disease resistance RPP13-like protein 4
6j5t_G4e-39452118028744Disease resistance RPP13-like protein 4
6j5t_L4e-39452118028744Disease resistance RPP13-like protein 4
6j5t_O4e-39452118028744Disease resistance RPP13-like protein 4
6j5u_A4e-39452118028744Disease resistance RPP13-like protein 4
6j5v_A4e-39452118028744Disease resistance RPP13-like protein 4
6j5w_A4e-39452118028744Disease resistance RPP13-like protein 4
6j6i_C4e-39452118028744Disease resistance RPP13-like protein 4
6j6i_F4e-39452118028744Disease resistance RPP13-like protein 4
6j6i_G4e-39452118028744Disease resistance RPP13-like protein 4
6j6i_L4e-39452118028744Disease resistance RPP13-like protein 4
6j6i_O4e-39452118028744Disease resistance RPP13-like protein 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253262RWPTRRRRRR
2257264RRRRRRTR
3258263RRRRRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g09434.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565612.30.0putative disease resistance RPP13-like protein 2
TrEMBLA0A0Q3FZB70.0A0A0Q3FZB7_BRADI; Uncharacterized protein
STRINGBRADI2G09434.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP8320712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.12e-20ERF domain protein 11