PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g08905.3.p | ||||||||
Common Name | BRADI_2g08905 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C3H | ||||||||
Protein Properties | Length: 134aa MW: 14634.4 Da PI: 8.7513 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.4 | 2.8e-09 | 66 | 88 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C++f rtGtCk+Gd+C++ H++ Bradi2g08905.3.p 66 VCNHFVRTGTCKFGDSCRYFHPK 88 6********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00451 | 2.9E-4 | 3 | 38 | IPR003604 | Zinc finger, U1-type |
SuperFamily | SSF57667 | 4.2E-15 | 4 | 48 | No hit | No description |
Pfam | PF06220 | 3.1E-9 | 5 | 37 | IPR013085 | Zinc finger, U1-C type |
PROSITE profile | PS50103 | 14.587 | 61 | 89 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.5E-4 | 63 | 88 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-7 | 64 | 89 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-6 | 66 | 86 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.3E-7 | 66 | 88 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MPLGKYYCDY CDKEFQDTAA ARRRHLQGAQ HHRARALWYD SVRRQESIGG ASPFLQHDAA 60 ILGKGVCNHF VRTGTCKFGD SCRYFHPKPH AVNPASAPSG NILGGHTSWG NLPPSLQPPP 120 DGGHPSLPFI DWG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g08905.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 5e-55 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010230700.1 | 2e-90 | zinc finger CCCH domain-containing protein 3 | ||||
Swissprot | Q0JP11 | 2e-58 | C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A0Q3JYP8 | 7e-95 | A0A0Q3JYP8_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G08905.1 | 7e-90 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 3e-40 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g08905.3.p |
Publications ? help Back to Top | |||
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