PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g06890.3.p | ||||||||
Common Name | BRADI_2g06890, LOC100827760 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | TCP | ||||||||
Protein Properties | Length: 480aa MW: 49382.6 Da PI: 6.9546 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 111.1 | 1.6e-34 | 88 | 187 | 2 | 83 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasec..eae 76 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai+ l + ++++s++ +++ Bradi2g06890.3.p 88 TGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKDAIDSLDVLpawqptnvapgpgnagAAPPSSSThpDDS 180 79**************************************************************88888888888877764444444442222 PP TCP 77 sssssas 83 +++s ++ Bradi2g06890.3.p 181 AENSDDQ 187 2222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.6E-30 | 88 | 153 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.801 | 90 | 148 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MGDPGGHHHH GLQTQLLSFG GVHHMHQFTA QAMQTQPPAS SASQSRARGG RGGGEIVAAA 60 AAPGTRVRGG GGGGEIVAVQ GGHIVRSTGR KDRHSKVCTA RGPRDRRVRL SAHTAIQFYD 120 VQDRLGYDRP SKAVDWLIKN AKDAIDSLDV LPAWQPTNVA PGPGNAGAAP PSSSTHPDDS 180 AENSDDQAQA ITIAAHASFD FASGGGGGGG GGGTGGGGIS FLPPSLDSDS IADTIKSFFP 240 MGGTAGGGEP SSSTVAAGSH SSAAIGFQSY TPDLLSRTGS QSQELRLSLQ PLPDPMFHHH 300 DHGQHEQQQH RSHGHGGNGT APQQALFPGA ANYSSFGGGG AMWATEQPQS QRIVPWSVPD 360 PGGGGSTGSY LFNVSQQAAH MQAALSGQSQ FFFQRGPLQS SNQPSDRGWP ESVEADNNNN 420 NPMQQHNHQG AMNPSISAIG FAPGVSFSGF RIPARIQGDE EHNGGNGDKP PSVSSASHH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-20 | 95 | 148 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 6e-20 | 95 | 148 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 202 | 213 | SGGGGGGGGGGT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g06890.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014753598.1 | 0.0 | transcription factor PCF5 | ||||
Swissprot | Q8LT07 | 1e-165 | PCF5_ORYSJ; Transcription factor PCF5 | ||||
TrEMBL | A0A0Q3ISB0 | 0.0 | A0A0Q3ISB0_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G06890.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 7e-67 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g06890.3.p |
Entrez Gene | 100827760 |