PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g06790.3.p

Common Name

BRADI_2g06790, LOC100823451

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 321aa MW: 34405.2 Da PI: 6.894

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g06790.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.7	3.7e-11	187	232	5	50
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 kr +r NR +A+rsR RK+++i eLe+ v +L++e +aL ++ Bradi2g06790.3.p 187 KRVKRILANRQSAQRSRVRKLQYISELERSVTSLQTEVSALSPRVA 232 8999*********************************999987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.6E-14	183	247	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.76	185	241	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.7E-14	187	241	No hit	No description
Pfam	PF00170	4.8E-10	187	237	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.83E-11	187	241	No hit	No description
CDD	cd14703	1.19E-23	188	238	No hit	No description
PROSITE pattern	PS00036	0	190	205	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MAQLPPKIPT MAPAWPEFGG GHHHSARHHH HHQRSPSMGA FLAAPLPPLP LPPPAPAANG 60 AQQQQQPSWV DEFLDFSAAK RGAHRRTVSD SVAFLDDDNA GAGAAAHEFE RLDDAQLMSM 120 FSDDLTPPPP PQQPAAPSAS SPSDHNSNIN DEKQDNKGGE AEEAQSGCNG GGGGSAAPYS 180 PATVDPKRVK RILANRQSAQ RSRVRKLQYI SELERSVTSL QTEVSALSPR VAFLDHQRSL 240 LTLGNSHLKQ RIAALAQDNI FKDAHQEALK KEIERLRQIY QQQSPKNAES PTPDAPLQVR 300 SDNGLIANEG TAGPAPCLPS *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g06790.3.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by dehydration and salt stress. {ECO:0000269\|PubMed:18065552}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014753813.1	0.0	basic leucine zipper 2
Swissprot	Q5QNI5	1e-105	BZP02_ORYSJ; Basic leucine zipper 2
TrEMBL	A0A0Q3QP89	0.0	A0A0Q3QP89_BRADI; Uncharacterized protein
STRING	BRADI2G06790.1	1e-156	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	2e-80	bZIP family protein

Link Out ? help Back to Top
Phytozome	Bradi2g06790.3.p
Entrez Gene	100823451

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]