PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g06210.1.p
Common NameBRADI_2g06210, LOC100837244
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HD-ZIP
Protein Properties Length: 883aa    MW: 95589.8 Da    PI: 6.3808
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g06210.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.6e-181573357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      k  ++t+eq+e+Le+l++++++ps  +r++L +++     ++ +q+kvWFqNrR +ek+
  Bradi2g06210.1.p 15 KYVRYTPEQVEALERLYYECPKPSSLRRQQLVRECavlaAVDPKQIKVWFQNRRCREKQ 73
                      6789*****************************************************97 PP
2START169.52.2e-532044112204
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++ g a+ra+g+v m++a  v+e+l+d++ W ++++++e+++v+  g  g+++
  Bradi2g06210.1.p 204 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCAGVAARACGLVGMEPA-KVAEILKDRPLWLRDCRSMEVVNVLPAGsnGTIE 295
                       789*******************************************************.8888888888************************ PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l +++l+a ++l+p Rdf+ +Ry+  l +g++v++++S++s+q  p+    ++++R+e+lpSg+li+p+++g+s +++v+h dl+ r++++++
  Bradi2g06210.1.p 296 LLYMQLYAQTTLAPaRDFWLLRYTSILDDGSLVVCERSLSSKQGGPSmplVQPFIRGEMLPSGFLIRPSDGGGSVIHIVDHLDLEPRSVPEVV 388
                       **********************************************999999***************************************** PP

                       HHHHHHHHHHHHHHHHHHTXXXX CS
             START 182 rslvksglaegaktwvatlqrqc 204
                       r+l++s+++ ++k+ +a+l++++
  Bradi2g06210.1.p 389 RPLYESSAIVAQKMSMAALRYLR 411
                       *******************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.2731074IPR001356Homeobox domain
SMARTSM003896.4E-151278IPR001356Homeobox domain
PfamPF000461.1E-151573IPR001356Homeobox domain
CDDcd000861.44E-141572No hitNo description
SuperFamilySSF466891.58E-161576IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-171773IPR009057Homeodomain-like
CDDcd146862.56E-567106No hitNo description
PROSITE profilePS5084827.029194413IPR002913START domain
CDDcd088757.68E-72198414No hitNo description
Gene3DG3DSA:3.30.530.204.4E-21201408IPR023393START-like domain
SMARTSM002341.7E-42203413IPR002913START domain
SuperFamilySSF559611.51E-34203414No hitNo description
PfamPF018523.8E-51204411IPR002913START domain
PfamPF086707.4E-46738881IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MVTAREMAAA MDASKYVRYT PEQVEALERL YYECPKPSSL RRQQLVRECA VLAAVDPKQI  60
KVWFQNRRCR EKQRRESGRL QSLNRKLTAM NKLLMEENDR LQKQVSSLVY ENGYYRQQHT  120
HSVRPSSPPP APAAMSSSSS LRLLQVREAH AFVAPPPPPL LLPLQAGLAT TDTSCESVVT  180
SGQQQNVVVP PPPRDASPAG LMSIAEETLT EFLSKATGTA VEWVQMPGMK PGPDSIGIIA  240
ISHGCAGVAA RACGLVGMEP AKVAEILKDR PLWLRDCRSM EVVNVLPAGS NGTIELLYMQ  300
LYAQTTLAPA RDFWLLRYTS ILDDGSLVVC ERSLSSKQGG PSMPLVQPFI RGEMLPSGFL  360
IRPSDGGGSV IHIVDHLDLE PRSVPEVVRP LYESSAIVAQ KMSMAALRYL RQLAHEDTHS  420
IITGWGRQPA ALRALSQKLT RGFNEALCGL TDDGWSAIES DGVDDVCISV NSSLNKVISC  480
NATFGDGLPI VSAGVLCAKA SMLLQDVSPP SLLQFLHEHR SQWADSTLDA FFASALKPNF  540
CNLPMSRLGG FSGQVILPLA HTFDPEEFLE VIKIGNASNY QDTLMHRDLF LLQMYNGVDE  600
NTVGSCSELI FAPIDASFSD DSPLLPSGFR IIPIDSPLDT SSPNCTLDLA STLEVGTPRG  660
RMTGSGSVNG AGMKAVMTIA FQFAFESHLQ DSVAAMAQQY MRSIISSVQR IALALSSSRL  720
VSHGSPRLLP HVTPEAATLS RWIVQSYRFH FGAELIKSGD ADGGESVLKS LWHHTSAILC  780
CSLKAMPVLT FANQSGLDML ETTLAALQDM ALEKILGDQA GKSLLAELPG IMEQGFACVQ  840
GGVCASRLGR PAAYEKAVAW KVLDDGGAAH CVCFAFLGWS FV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g06210.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3653120.0AK365312.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2033F15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003565084.10.0homeobox-leucine zipper protein HOX29
RefseqXP_024314171.10.0homeobox-leucine zipper protein HOX29
SwissprotA2WLR50.0HOX29_ORYSI; Homeobox-leucine zipper protein HOX29
TrEMBLA0A0Q3IBF50.0A0A0Q3IBF5_BRADI; Uncharacterized protein
STRINGBRADI2G06210.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein