PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g05590.1.p
Common NameBRADI_2g05590, LOC100828575
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 369aa    MW: 38833.5 Da    PI: 8.6127
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g05590.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.65.8e-13112156347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+  ++ + ++lG+g+W+ I+r +   Rt+ q+ s+ qky
  Bradi2g05590.1.p 112 PWTEEEHRMFLMGLQKLGKGDWRGISRSFVVSRTPTQVASHAQKY 156
                       8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.565319IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.558105161IPR017930Myb domain
SuperFamilySSF466891.42E-16107161IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-18108160IPR006447Myb domain, plants
SMARTSM007176.9E-11109159IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-11109155IPR009057Homeodomain-like
PfamPF002491.5E-10112156IPR001005SANT/Myb domain
CDDcd001675.19E-9112157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNARTCPA RGGGGGGGGG VRLFGVHLTS PPVASMKKSA SMSCIASSLG  60
GGSGGSSPAA GAGGGGGGAR GGGEGAPGYV SDDPMHASCS TNGRAERKKG TPWTEEEHRM  120
FLMGLQKLGK GDWRGISRSF VVSRTPTQVA SHAQKYFIRQ TNSSRRKRRS SLFDMVPEMP  180
MDESPTGAEE FMVCSTQEES SSSNKLSLFH LGQHKEAEFD KDVPTMHLRQ HKESEFAEPS  240
LEAPDLDMNH AVSFKAATVQ TMPAFYPTLV PVPLTLWPQN VANVEVAGTT HEILKPTPVN  300
GKEAVKGDEV VSMSKLSIGD GSSGSLEPSA LSLQLTGSTN TRQSAFHVNP PMTRTDLSKG  360
NNSPIHAV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g05590.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564624.10.0transcription factor MYBS3
TrEMBLI1HCT90.0I1HCT9_BRADI; Uncharacterized protein
STRINGBRADI2G05590.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19393791
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.11e-69MYB_related family protein