PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g04790.2.p | ||||||||
Common Name | BRADI_2g04790, LOC104583031 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | BES1 | ||||||||
Protein Properties | Length: 170aa MW: 18229.3 Da PI: 10.6364 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 133.8 | 1.8e-41 | 45 | 157 | 2 | 113 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr.kgskpleeaeaagssasaspess 93 +s r+pt +ErEnn++RERrRR++a++iyaGLRa ++y+lpk+aD+n+Vl+ALc+eAG++v++DG++ r +g ++ + s++ + ss Bradi2g04790.2.p 45 TSLRHPTPRERENNRQRERRRRQVATRIYAGLRARAGYALPKHADQNDVLRALCAEAGYLVDEDGNVSRlAGHQRSSGVGGPSGSSDHLQPSS 137 689******************************************************************878888855555566666666666 PP DUF822 94 lqsslkssalaspvesysas 113 ++ ++++ a + p ++++ Bradi2g04790.2.p 138 TSGATEAVAPQQPEPEQKHK 157 66566667766666666554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 2.6E-30 | 47 | 139 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MEAAEGDVEA AAMAASAAGG RRGCIRSTRG PWTVRRQGRG GAVKTSLRHP TPRERENNRQ 60 RERRRRQVAT RIYAGLRARA GYALPKHADQ NDVLRALCAE AGYLVDEDGN VSRLAGHQRS 120 SGVGGPSGSS DHLQPSSTSG ATEAVAPQQP EPEQKHKISL ELTLSFTYM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zd4_A | 7e-13 | 13 | 113 | 337 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_B | 7e-13 | 13 | 113 | 337 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_C | 7e-13 | 13 | 113 | 337 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
5zd4_D | 7e-13 | 13 | 113 | 337 | 437 | Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g04790.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002523 | 1e-108 | AP002523.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0013F10. | |||
GenBank | AP014957 | 1e-108 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010232995.1 | 1e-120 | BES1/BZR1 homolog protein 2 | ||||
TrEMBL | A0A0Q3MEY9 | 1e-119 | A0A0Q3MEY9_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G04790.1 | 3e-79 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13201 | 30 | 32 | Representative plant | OGRP10084 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19350.3 | 7e-16 | BES1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g04790.2.p |
Entrez Gene | 104583031 |