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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g04631.1.p | ||||||||
Common Name | BRADI_2g04631 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C3H | ||||||||
Protein Properties | Length: 189aa MW: 21148.8 Da PI: 8.125 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26 | 1.6e-08 | 58 | 83 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC ++ +G C +G+ C FaHg Bradi2g04631.1.p 58 YKTKLCVNYDTSGRCFFGEHCAFAHG 83 9************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-14 | 55 | 90 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.98E-10 | 56 | 88 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-4 | 57 | 84 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.267 | 57 | 85 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-5 | 58 | 83 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.441 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-6 | 94 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.8 | 95 | 120 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-5 | 97 | 118 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MEREQRETTR KNIIVVEPGE RPPQRPPPPE RSSDGIVLAV GRQQNFQLDP PLPAKLFYKT 60 KLCVNYDTSG RCFFGEHCAF AHGVAELRRP DVDMGDKICH NFRYNGTCYY GENCIFSHAS 120 PGLAIRNPSA GREMPAAPGR AFPPVPAPAV RERPHPEEQE AGARRVSNLE RLSWNKTGGT 180 YGDWPEQY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1m9o_A | 8e-12 | 58 | 118 | 10 | 72 | Tristetraproline |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g04631.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024313999.1 | 1e-139 | zinc finger CCCH domain-containing protein 1-like | ||||
TrEMBL | A0A0Q3QNA4 | 1e-137 | A0A0Q3QNA4_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13364 | 20 | 30 | Representative plant | OGRP10392 | 5 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.1 | 1e-08 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g04631.1.p |