PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g04622.1.p | ||||||||
Common Name | BRADI_2g04622, LOC104583029 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C3H | ||||||||
Protein Properties | Length: 220aa MW: 23991.1 Da PI: 9.2893 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.9 | 1.5e-07 | 53 | 78 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC+ + tG+C y + C+FaHg Bradi2g04622.1.p 53 YKTKLCDKYETTGFCMYAEGCTFAHG 78 9************************8 PP | |||||||
2 | zf-CCCH | 17.7 | 6.4e-06 | 109 | 130 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + C++f+ G C+yG++C F H Bradi2g04622.1.p 109 RVCHNFRDRGVCHYGEKCVFPH 130 68****************9966 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-14 | 48 | 85 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-9 | 51 | 83 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0039 | 52 | 79 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.812 | 52 | 80 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.5E-4 | 53 | 78 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.97 | 105 | 132 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.225 | 105 | 133 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-4 | 109 | 131 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-5 | 109 | 131 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MERVIRRWDS TPEDVIVLQT GGGPVRPQPS SAGIVPQQQC PDLPPPPPEK LYYKTKLCDK 60 YETTGFCMYA EGCTFAHGHA DLRRPTHGFA DLRRLPPDAH GPAGAVGGRV CHNFRDRGVC 120 HYGEKCVFPH TSAPGSGREI RNTGEPRRSE ASPAARASSA TAPRYGSAPG RAFPPLPAPV 180 VPRQMPEQQQ QQGAPKVSVL ERLSQRKTRG IYGDWPEHL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g04622.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010232991.1 | 1e-160 | zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | A0A0Q3MEW2 | 1e-159 | A0A0Q3MEW2_BRADI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13364 | 20 | 30 | Representative plant | OGRP10392 | 5 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 2e-06 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g04622.1.p |
Entrez Gene | 104583029 |