PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

bZIP

Protein Properties

Length: 187aa MW: 19803.8 Da PI: 10.7124

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g04590.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	38.5	2.6e-12	95	155	2	62
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ke r +r+ +NR++A+ R+RKka++ eLe k+k Le N +L +++++l++e +l++ Bradi2g04590.1.p 95 KEQNRLKRLLRNRVSAQQARERKKAYMTELEVKAKDLELRNAELEQKVSTLQNENNTLRQI 155 78899***************************************************99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-12	94	158	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.1E-11	95	156	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.059	96	159	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.81E-12	99	156	No hit	No description
CDD	cd14704	1.98E-15	99	149	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.4E-16	99	158	No hit	No description
PROSITE pattern	PS00036	0	101	116	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MAAQEQEQEK QQAKTSTTSS LPSSSERSSS SGPNNLKEGG AESDEEIRRV PEMGGGSASS 60 GAGDGKQLLL QQHGAGGQPP ASASGKKRGR AAGDKEQNRL KRLLRNRVSA QQARERKKAY 120 MTELEVKAKD LELRNAELEQ KVSTLQNENN TLRQILKNTT AHAGKKSGGG GKGGDGGKKQ 180 HHFSKS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	84	90	GKKRGRA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that promotes photomorphogenesis in the light and positively regulates fruit pigmentation and fruit nutritional quality. Probably acts downstream of the light receptor network and directly affects transcription of light-induced genes. {ECO:0000269\|PubMed:15178762}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g04590.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK365648	1e-144	AK365648.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2035O05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003569436.1	1e-129	transcription factor HY5
Swissprot	Q9SM50	5e-43	HY5_SOLLC; Transcription factor HY5
TrEMBL	I1HCH7	1e-127	I1HCH7_BRADI; Uncharacterized protein
STRING	BRADI2G04590.1	1e-128	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1408	38	111
Representative plant	OGRP2081	17	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11260.1	3e-34	bZIP family protein

Link Out ? help Back to Top
Phytozome	Bradi2g04590.1.p
Entrez Gene	100825301

Publications ? help Back to Top
Wang F, et al. Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato. Plant Physiol., 2018. 176(2): p. 1311-1326 [PMID:29146776] Liu CC, et al. The bZip transcription factor HY5 mediates CRY1a-induced anthocyanin biosynthesis in tomato. Plant Cell Environ., 2018. 41(8): p. 1762-1775 [PMID:29566255]