PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi2g03427.1.p | ||||||||
Common Name | BRADI_2g03427, LOC100823554 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 417aa MW: 44708.4 Da PI: 7.0722 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.5 | 0.00027 | 306 | 344 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YI+ Lq Bradi2g03427.1.p 306 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYINFLQ 344 7788899*********998.....8*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.211 | 294 | 343 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.50E-5 | 304 | 348 | No hit | No description |
SuperFamily | SSF47459 | 1.1E-10 | 304 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-8 | 308 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MMASSSSSSD LSAADHHHLI LQGDLPWRPP SSSLPLAPAL QHAIGGTHQQ WNQPLILDQL 60 SPDELELLLQ SAQAQLHHNH SHSHLPAAAS PLTAAVAPHQ LSSLLMMQEL GFQWSSAVTE 120 TTADTSSSSQ QHQDAVLKDD DQEEAPKLAS VGSLINSCRH RSSPMTVDYN DIVVDHGGGG 180 AVVLPSFNVS LMQKPCPVVG GEAFEMLCKS GQLAMMPTSG TRLLGSEHMA YDYGPPAHHH 240 RLLQGPSSSY KMGTVPAALL SGNGNVSSCH DEQQLQLAAA VSSISSKKKS TRLRPSTTII 300 PSFKVRKEKL GDRIAALQQL VSPFGKTDTA SVLMEAIGYI NFLQDQVETL SGPYMKSSKH 360 KKARTTQQRG PSNTGDQKEE AKLDLRSRGL CLVPLSCTSY VTNENGVWAP PNFRGN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi2g03427.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-43 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024314930.1 | 0.0 | transcription factor bHLH110 isoform X1 | ||||
TrEMBL | I1HC34 | 0.0 | I1HC34_BRADI; Uncharacterized protein | ||||
STRING | BRADI2G03427.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7240 | 32 | 42 | Representative plant | OGRP1342 | 13 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27660.1 | 1e-40 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi2g03427.1.p |
Entrez Gene | 100823554 |