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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Bradi2g00824.2.p |
Common Name | BRADI_2g00824 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family |
BES1 |
Protein Properties |
Length: 489aa MW: 55351.8 Da PI: 6.2041 |
Description |
BES1 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Bradi2g00824.2.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF822 | 76.1 | 1.1e-23 | 1 | 57 | 16 | 76 |
DUF822 16 krRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl 76
k+RERr Rai+ +i+aGLR++Gny l++raD+neV r+AGwvv +DGt ++ +s+ +
Bradi2g00824.2.p 1 KLRERRWRAITGRILAGLRRHGNYSLRVRADINEVA----RDAGWVVLPDGTAFPSSSHSQ 57
89*********************************6....9*************9776655 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
Pfam | PF05687 | 3.4E-20 | 1 | 57 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
Gene3D | G3DSA:3.20.20.80 | 3.8E-173 | 77 | 483 | IPR013781 | Glycoside hydrolase, catalytic domain |
SuperFamily | SSF51445 | 2.28E-158 | 78 | 483 | IPR017853 | Glycoside hydrolase superfamily |
Pfam | PF01373 | 2.0E-101 | 86 | 473 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.8E-70 | 104 | 118 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.8E-70 | 125 | 143 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.8E-70 | 147 | 168 | IPR001554 | Glycoside hydrolase, family 14 |
PROSITE pattern | PS00506 | 0 | 151 | 159 | IPR018238 | Glycoside hydrolase, family 14, conserved site |
PRINTS | PR00842 | 9.4E-7 | 227 | 236 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00750 | 6.8E-70 | 237 | 259 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.8E-70 | 330 | 346 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.8E-70 | 347 | 358 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.8E-70 | 363 | 386 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 6.8E-70 | 403 | 425 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00842 | 9.4E-7 | 454 | 468 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00842 | 9.4E-7 | 469 | 483 | IPR001371 | Glycoside hydrolase, family 14B, plant |
Sequence ? help Back to Top |
Protein Sequence Length: 489 aa
Download sequence Send
to blast |
KLRERRWRAI TGRILAGLRR HGNYSLRVRA DINEVARDAG WVVLPDGTAF PSSSHSQNPS 60 CIWEFVLEFW WPSMGTDLGV VNVSGEVADA DELVGQLRVL KAAGVDGVMV DCWWGNVEAQ 120 RPQEYNWTGY KRLFQMIREL KLKLQVVMSF HECGGNVGDD VSIPLPEWVI EIGRSNLDIY 180 FTDREGRRNT ECLIDKERVL QGRTAVEVYF DFMRSFRVAF DEYFEDGIIS EIEVGLGACG 240 ELRYPSYAAN HGWKYPGIGE FQVLTKKSEK AAEARGHTIW ARSPDNAGHY NSEPNNTGYY 300 GRFFLNWYSQ VLLDHADRVL MLARLAFEGS AIAVKVSGIH WWYKTASHAA ELTAGFYNPC 360 NGYAPIVTVL KKHGAALNFT CVELRTMARH EVFPEALADP EGLVWQVLNA AWDAGIPVAS 420 ENALPCYDRD GFNKTLENAK PRNDPDGRHL FGFTYLRLCS VLFEKPNFME FERFVKRMHG 480 EAVLDLQA*
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Functional Description ? help
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Source |
Description |
UniProt | Low beta-amylase activity. Interacts poorly with starch or other alpha-1,4-glucan. {ECO:0000269|PubMed:18390594, ECO:0000269|PubMed:19664588}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Slightly by cold stress. {ECO:0000269|PubMed:16297066}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | FN179398 | 1e-159 | FN179398.1 Hordeum vulgare subsp. vulgare partial mRNA for beta-amylase (BAM6 gene). |
Publications
? help Back to Top |
- Smith AM,Zeeman SC,Smith SM
Starch degradation. Annu Rev Plant Biol, 2005. 56: p. 73-98 [PMID:15862090] - Lundmark M,Cavaco AM,Trevanion S,Hurry V
Carbon partitioning and export in transgenic Arabidopsis thaliana with altered capacity for sucrose synthesis grown at low temperature: a role for metabolite transporters. Plant Cell Environ., 2006. 29(9): p. 1703-14 [PMID:16913860] - Li J, et al.
Catalytically-inactive beta-amylase BAM4 required for starch breakdown in Arabidopsis leaves is a starch-binding-protein. Arch. Biochem. Biophys., 2009. 489(1-2): p. 92-8 [PMID:19664588] - Andriotis VM,Pike MJ,Kular B,Rawsthorne S,Smith AM
Starch turnover in developing oilseed embryos. New Phytol., 2010. 187(3): p. 791-804 [PMID:20546137] - Monroe JD, et al.
Arabidopsis β-Amylase2 Is a K+-Requiring, Catalytic Tetramer with Sigmoidal Kinetics. Plant Physiol., 2017. 175(4): p. 1525-1535 [PMID:29066669]
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