PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g00226.1.p
Common NameBRADI_2g00226, LOC100822851
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-X1
Protein Properties Length: 909aa    MW: 100046 Da    PI: 8.4887
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g00226.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X118.16e-06258275118
          zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                       CG H+C   CH GpCppC
  Bradi2g00226.1.p 258 CGLHRCPVDCHDGPCPPC 275
                       ****************** PP
2zf-NF-X118.93.3e-06365384119
          zf-NF-X1   1 CGkHkCqklCHeGpCpp.Cp 19 
                       CG+HkC + CH+G+C++ C+
  Bradi2g00226.1.p 365 CGRHKCPERCHRGQCDKiCR 384
                       *****************997 PP
3zf-NF-X117.21.1e-05418435118
          zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                       CG+H C++ C+ G+CppC
  Bradi2g00226.1.p 418 CGRHACKRRCCVGDCPPC 435
                       ****************** PP
4zf-NF-X124.36.6e-08445464120
          zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                       CG+HkCq++CH+G C pCp+
  Bradi2g00226.1.p 445 CGNHKCQSPCHRGACSPCPL 464
                       ******************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578503.88E-5104162No hitNo description
PROSITE patternPS013590105155IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.052105156IPR001841Zinc finger, RING-type
SMARTSM004380.2205223IPR000967Zinc finger, NF-X1-type
PfamPF014220.019206222IPR000967Zinc finger, NF-X1-type
CDDcd060085.84E-9248296No hitNo description
PfamPF014221.4E-4258275IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0033258277IPR000967Zinc finger, NF-X1-type
CDDcd060081.65E-7301341No hitNo description
PfamPF014220.2311329IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0092311330IPR000967Zinc finger, NF-X1-type
CDDcd060083.09E-8355404No hitNo description
PfamPF014220.0015365384IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0064365385IPR000967Zinc finger, NF-X1-type
CDDcd060081.92E-8408456No hitNo description
PfamPF014220.0023418435IPR000967Zinc finger, NF-X1-type
SMARTSM004380.013418437IPR000967Zinc finger, NF-X1-type
CDDcd060088.75E-11435483No hitNo description
PfamPF014221.2E-5445463IPR000967Zinc finger, NF-X1-type
SMARTSM004384.3E-4445464IPR000967Zinc finger, NF-X1-type
SMARTSM0043848508523IPR000967Zinc finger, NF-X1-type
PfamPF0142236512522IPR000967Zinc finger, NF-X1-type
PfamPF0142219531540IPR000967Zinc finger, NF-X1-type
SMARTSM00438140531576IPR000967Zinc finger, NF-X1-type
PfamPF014220.36613623IPR000967Zinc finger, NF-X1-type
SMARTSM00438190613634IPR000967Zinc finger, NF-X1-type
CDDcd060081.92E-4653700No hitNo description
SMARTSM004380.6665683IPR000967Zinc finger, NF-X1-type
PfamPF014223.2666682IPR000967Zinc finger, NF-X1-type
SMARTSM004382728749IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 909 aa     Download sequence    Send to blast
MPSSYAAVAS SSRKPVPVAT ATATARRPAA PLPAPAPSPS NPRHVSDSDP SCCSSSSGDE  60
TDLAASDPAT ASVISTYLSV AGDGADLAKV RLFLSSAARR RSPPCLICLD PIRPSDPVWS  120
CSASCFALLH LPCIQSWAHQ SASAAPSPTW GCPKCRVAYP KSQTPTSYHC FCSKTVDPPA  180
DPWILPHSCG EVCDRPLNSN ADSGCQHTCL LRCHPGPCPP CPTVVPNARC FCGAHREPRR  240
CARQRYSCGS KCNKSLSCGL HRCPVDCHDG PCPPCAVRGN HKCECGETTV ERLCSERVFQ  300
CKRECGGMLD CGKHRCERGC HGGKCGECPL RGRRTCPCGK TDYPRLECDM EAATCGSTCE  360
KVLGCGRHKC PERCHRGQCD KICRLVIKKS CRCGGLKKEL PCHQDLTCER KCQRLRDCGR  420
HACKRRCCVG DCPPCAEICD RRLRCGNHKC QSPCHRGACS PCPLMKTISC FCGKTYFEVP  480
CGTEKNQKPP KCSKKCNVDR LCRHKFDCRP HKCHYGACPP CKMICAEELS CGHKCKERCH  540
GSIPPPNPEY TLKPMKKKME KHIECTPGTP CPPCQEVVLV PCLGQHIGQE RAIPCSKRRQ  600
FPCQNLCGNP LPCGNHYCTK ACHVLEIPLG QPKADIILSL HRKNTLAEPC EDCDLPCQRV  660
RNSPCTHPCP LPCHENDCPP CKVLVKRSCH CGAMTHSFEC VHYNNLNAKE QLKVRSCGGP  720
CHRKLPNCPH LCSEICHPDQ CPSVDQCMKK VNVRCACNTL KKEWVCQDVL KEYRRSGRDP  780
KEVPKGQFGG GLLLCGEDCV KKVKVSSTEL HLRKVQEVKN PAMEVANVPK RKKKRERGGQ  840
EPAPYSMLQK IKDFLSGPLL KLLLLVIAIA GLVGLVVVTV KFIYQISDWM NEMEEQRTRQ  900
RNLRAPRL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g00226.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569260.10.0NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0Q3MD450.0A0A0Q3MD45_BRADI; Uncharacterized protein
STRINGMLOC_4879.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107733537
Representative plantOGRP63251718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors