![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Bradi1g78230.1.p |
Common Name | LOC100834684 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family |
GRAS |
Protein Properties |
Length: 621aa MW: 65332.4 Da PI: 6.287 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Bradi1g78230.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Bdi&pid=Bradi1g78230.1.p) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 310.2 | 4.7e-95 | 254 | 619 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
v++L e+A+ ++gd a+++Larl+++ a ++g+p+ R a+yf+eAL+ l + e +++ ++ ++++ ++ +l a+k+fsevsP+l
Bradi1g78230.1.p 254 VDQLAEAARLAEAGDGFGAREILARLNHRlpaAPSAGTPLLRSAFYFKEALRVALDAATGEAASSSAAAASTPVDVLLKLGAYKAFSEVSPVL 346
689*************************999666677********************888888888999999999****************** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
+f+h+t+ qa+l++++g+ ++H++Dfdi+ G QW++L+q+La+R+ g++ l++T+++sp+s++ el+ ++e+L++fA+elgvpf+f+++
Bradi1g78230.1.p 347 QFAHFTCVQAVLDELAGAACIHVLDFDIGVGEQWASLMQELAQRRPGAAALKVTALVSPASHHPLELQLIHENLSNFAAELGVPFQFTFF--- 436
*****************************************************************************************9... PP
GRAS 185 rledleleeL.rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleak 274
+l+++++ eL ++ g+a+aV+l + + + ++vL+lv++l +k+v+ v++ +d+ ++ +F++++++al+ ++ l++sl+a
Bradi1g78230.1.p 437 SLDAVDPAELlAIAGGDAIAVHLPVGSVHAA----A----VPSVLHLVRRLGAKLVISVDRSCDRggGELPFATHLFQALQSCMFLLESLDAM 521
889998877637777**********998887....4....456**********************655669*******************998 PP
GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
+++ + ++k+Er+l++++i+++v+ ++++ + ++ Wr ++ +aGF pv++s++a++qa++ll+kv+++g+rve++ gsl+l W++ +L
Bradi1g78230.1.p 522 -GTDPDVASKIERFLIQPKIESCVTRRHRA-VTAGDKMLPWRTMFASAGFVPVQISNFAEAQADSLLKKVPVRGFRVEKRGGSLLLHWQRAEL 612
.7888************************9.88888899****************************************************** PP
GRAS 368 vsvSaWr 374
vsvSaWr
Bradi1g78230.1.p 613 VSVSAWR 619
******8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0030154 | Biological Process | cell differentiation |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 621 aa
Download sequence Send
to blast |
MPLGDLLLHG NQDQLASCAA ATDLWDPASV LDHRPSPPAS ASSTLSSSSP LRAPAAGVAA 60 LAKNVHPPPA QPAAASPWPP PPGEDDWVHH LPPLDMGMGM GMTWGDPHQS AAMPMPPVAG 120 DHQNPPSQQD STFLRWIIGG DDASSAAAMD HPDLDLDHML PFPLHPGNDD TKPAATAPPF 180 RSPLLHQQPH THAAFHGGFP SSASFDTQQQ AAKRQHPMAG ASSPKLLPPF VSGPGGFVSA 240 LKPKAEAGDD AAAVDQLAEA ARLAEAGDGF GAREILARLN HRLPAAPSAG TPLLRSAFYF 300 KEALRVALDA ATGEAASSSA AAASTPVDVL LKLGAYKAFS EVSPVLQFAH FTCVQAVLDE 360 LAGAACIHVL DFDIGVGEQW ASLMQELAQR RPGAAALKVT ALVSPASHHP LELQLIHENL 420 SNFAAELGVP FQFTFFSLDA VDPAELLAIA GGDAIAVHLP VGSVHAAAVP SVLHLVRRLG 480 AKLVISVDRS CDRGGGELPF ATHLFQALQS CMFLLESLDA MGTDPDVASK IERFLIQPKI 540 ESCVTRRHRA VTAGDKMLPW RTMFASAGFV PVQISNFAEA QADSLLKKVP VRGFRVEKRG 600 GSLLLHWQRA ELVSVSAWRC *
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU730901 | 0.0 | EU730901.1 Brachypodium distachyon clone BAC DH037O21, complete sequence. |