PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g77760.1.p
Common NameBRADI_1g77760, LOC100826729
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C3H
Protein Properties Length: 1991aa    MW: 218733 Da    PI: 5.3967
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g77760.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.3e-0619661986526
                        --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH    5 lCrffartGtCkyGdrCkFaHg 26  
                        +C+ f+++G+C+ G++C++ H+
  Bradi1g77760.1.p 1966 ICK-FHQSGYCRKGSSCSYLHP 1986
                        799.9999*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.106.0E-8111181IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579036.2E-8120173IPR011011Zinc finger, FYVE/PHD-type
CDDcd155686.07E-20128173No hitNo description
SMARTSM002492.2E-6128174IPR001965Zinc finger, PHD-type
PROSITE patternPS013590129189IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001510.0018351436IPR019835SWIB domain
SuperFamilySSF475929.16E-20354432IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.103.4E-24355436IPR003121SWIB/MDM2 domain
PfamPF022012.0E-14358431IPR003121SWIB/MDM2 domain
SMARTSM007191.1E-40491600IPR004343Plus-3 domain
PROSITE profilePS5136026.974491623IPR004343Plus-3 domain
SuperFamilySSF1590421.7E-32492618IPR004343Plus-3 domain
PfamPF031262.1E-22496598IPR004343Plus-3 domain
SuperFamilySSF552772.49E-14779841IPR003169GYF domain
PROSITE profilePS5082913.532788840IPR003169GYF domain
SMARTSM004442.8E-12789842IPR003169GYF domain
Gene3DG3DSA:3.30.1490.402.5E-13790841IPR003169GYF domain
PfamPF022131.0E-8791830IPR003169GYF domain
PROSITE profilePS5010314.31419611988IPR000571Zinc finger, CCCH-type
SMARTSM003560.001819631987IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.08E-519631986IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034968Biological Processhistone lysine methylation
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1991 aa     Download sequence    Send to blast
MDEAPARMAD DGPAEQQAAM GMDDSQFLGS MMGETVLAQP ALAPPLPPAP DFHHQQPVKR  60
EVKVELEQEA MVGVKRRRGR PPKTSAGGTA PAQAAAVLVP ASVSAAATAR KAAAKAARKR  120
AEDEEEVVCF ICFDGGDLVV CDRRGCPKVY HPACIKRDEA FFQSRSKWNC GWHICSSCEK  180
PVHYMCYTCT FSVCKICIKQ GKFFGVRGTK GFCDTCFGTI FLIESKDDDD TKVRVDFDDP  240
NSWEYLFKLY WLDLKGKLSL TMEELTGAKS RWNAPITYAR KEKDESSDDL YDANDDDGGG  300
SRKRRCANSS RGRKRRKAHS NRTIAVENVE ISTGDAGSLP KKEPSEGVLL PPDTKWASPE  360
LLEFVGHMRD GDQSFISQFD VQALLLDYIK KNDLRDPRRK SQIICDSRLH CLFRKTHVAH  420
FEMLRLLEMH FLVSDASTVN NGSHVDIKPN SARIDASGYC EMTEKLSPHR KKRMHGKMER  480
EPLANLNDYA AVDMHNMNLI YLRRSLMEDL IDDSAFPAKI SGGFVRIKIS GLGQKQDMYR  540
LVKVIGTHKV SEKYSTGKKT TNFALEILNL NKKEIITMDT ISNQDFTEEE CKRLRQCMKC  600
GLISRLKVGD VQEKAVIFQS VRVNDWLDNE KQRLGYLRDR ASETGRRKDL RECVEKLQLL  660
NSSQERARRI NEVLEVHVDP HMDPDYESTE EMDYQKAVVR IVNGKKSDGF FSPVNQQNHA  720
ERISDAIRHP RNLSKQSTIR KVAAGRNSRK FHSAVGTDIP KSGTCINTKI SEAASPSGVT  780
LSSDMEPEKV WQYKDPLGNV QGPFTLLQLS KWTTYFPHDL RVWLIFESEE RSLLLTEVLS  840
KQPKDFGQAA TVPSSKTTLA GSGQNRKRPN VDMNSALSPL GYSTLNSSEM MVKPAKCTVP  900
ERGSVNSLDD RFSVSGSSVP PKDACATTSR VQYQTKNSCF GPSPGSPYEQ SNSHHDGVQG  960
RCSGEWNNGH NRDGLWSPTM TQTSCSGQGN VESHDNQHDS KSSLKAGSAK DLRQDYSHTV  1020
PTQLTRRDVP SPVLASSPSE SRTASSQYES SCFSSTTNPS VHDELHSYIT SEKASNCAPV  1080
TFVEDRGSSS PSGMLSHSER VPICGTQSVP SMSISEMCKV GESKHMQKTL EADVSNASVN  1140
QSPQSKIFLD SSPDNQDTER ECPSPTLRSE SKEPAMDHSG PTPVAPETLD INKIPDYSPV  1200
ANIPVKSEPP ATEVGPTEHE YPSPTTRSES KELAVDHPGS TSVAPETLDI QRPDYSPVVN  1260
ISLKADPPAT EVGTREIGAT GSIPNPEKTD LCGEDSNIQK EFCRESTLVA SEKMVVGPAS  1320
RAELIDVCDV SGSVSNLEKT DLRGKDSNIQ KELYSESILV RSDKMMVKPA SGVESIDVAN  1380
VLESVSNLEK RDLSGEDSNV QKELVSESTL VMCEKMVAEP ATCAEPIDVS GVLKPVFSLE  1440
KTDLKHEDSN IQKELHTEPI IGTRENIVVD PASCAESIHV TDVLESAPTL EKTDLEGEDS  1500
NIQKELQAES IIVTREKMVV DPASGAESIH APDVLESVSN LEKTDLKGED SNIQKEMFCE  1560
PTLDTSEKMI IDPASCAESI DVSDVLESVF NLERTNLKGE GSCIQKELHP KSIFLTRENM  1620
VVDPASCPES IPVSDVLESV SKETDLKGDY SNIQRDLHEV STLVTRENMV VDLASCARSI  1680
DVPDVSGSLV PQSCGTTYMD AIAAIEDFMT TSPEEEPQCS SPIALSPWGE PGYYQGDAVD  1740
STLWDVQDYP MNDVWSLLPP TPTLQHLSGE KTDGSVAHVT ERVTVIQGDN ELFQRGPTPG  1800
EENVELANAG ASTAWGLNEQ VRPKSTAVSV PSIDGSTGVF GWKPSAIDSE SSNTPIAWTT  1860
SQNLNSSSSY ATAAASVKTS QEPSRKKECP DLNVANLEEA LGNTKSLKPS TGNANRGSQR  1920
NHHRDRYSEI SESWLLSSNY SRSRSAGFRG GAASRTSPRG QTQRGICKFH QSGYCRKGSS  1980
CSYLHPSLQQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302316KRRCANSSRGRKRRK
2311317GRKRRKA
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g77760.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229318.10.0uncharacterized protein LOC100826729
TrEMBLA0A0Q3P1Z10.0A0A0Q3P1Z1_BRADI; Uncharacterized protein
STRINGBRADI1G77760.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27091822
Representative plantOGRP1807911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.10.0nucleic acid binding;zinc ion binding;DNA binding