PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g77070.1.p
Common NameBRADI_1g77070, LOC100840700
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 312aa    MW: 32747.2 Da    PI: 7.8544
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g77070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.82.2e-14112163155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+++  A++Y+k+L+
  Bradi1g77070.1.p 112 QRMTHIAVERNRRRLMNDHLASLRSLIPSD---YIPRGDQATVVGGAIDYVKQLE 163
                       79****************************...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.67E-13110166No hitNo description
PROSITE profilePS5088814.589111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14112177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-11112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-13112166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MERMQLQGPI ITSLWGEQAA ATAAAQVPFL ALLQGAMAEE QDDDKRQYAA FACPRTEDAG  60
LLESCVTHAT APAANGGVPG QQRRRKRPRA RPRAAPAPEA KRKKPAEEAE CQRMTHIAVE  120
RNRRRLMNDH LASLRSLIPS DYIPRGDQAT VVGGAIDYVK QLEQQLVALQ AASAAARRGS  180
VSVSGAVGVV VGTAATAAAD GVFVAPQHTS YSSPSEQGAA GVDVEAMAAV GGHVRVRVAG  240
QRWPGRLVRA VAAMEDLRLA VLHLAVTSVG QDAVVYCFNL KIEEGCEVAT ADEVAAVVHQ  300
IFAYAAGVGV C*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18292RRRKRPRARPR
284102RKRPRARPRAAPAPEAKRK
384103RKRPRARPRAAPAPEAKRKK
4112123RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g77070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3554703e-92AK355470.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1021A13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562168.10.0transcription factor bHLH57
TrEMBLA0A0Q3KI570.0A0A0Q3KI57_BRADI; Uncharacterized protein
STRINGBRADI1G77070.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79573344
Representative plantOGRP1417044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.12e-31bHLH family protein