PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g76970.1.p
Common NameBRADI_1g76970, LOC100839642
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TALE
Protein Properties Length: 315aa    MW: 34834.4 Da    PI: 6.1902
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g76970.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-072642972154
                       HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       k +yp+++++++L +++gL+ +q+ +WF N+R +
  Bradi1g76970.1.p 264 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 297
                       469*****************************87 PP
2ELK27.76.2e-10218239122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELK +L++++++++g++++E++
  Bradi1g76970.1.p 218 ELKIELKQGFKSRIGDVREEIL 239
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.0E-134993IPR005540KNOX1
PfamPF037902.0E-135191IPR005540KNOX1
SMARTSM012562.5E-23104159IPR005541KNOX2
PfamPF037913.8E-18107158IPR005541KNOX2
PROSITE profilePS512139.289218238IPR005539ELK domain
PfamPF037892.2E-6218239IPR005539ELK domain
SMARTSM011880.0049218239IPR005539ELK domain
PROSITE profilePS5007111.693238301IPR001356Homeobox domain
SMARTSM003894.9E-10240305IPR001356Homeobox domain
SuperFamilySSF466895.56E-16240304IPR009057Homeodomain-like
CDDcd000861.57E-11241302No hitNo description
Gene3DG3DSA:1.10.10.604.8E-25245304IPR009057Homeodomain-like
PfamPF059201.1E-17258297IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MLQGDHQLIE GGGTMEMGSF GGGGGECSSS SAAAAAAAVT AAAEAEERQL LKGEMAVHPL  60
CEQLVAAHVG CLRVATPIDH LPIIDAQLAQ SGGLLHSYAA HHRPFLSPHD KQDLDSFLAQ  120
YLMLLCSFRE QLQQHVRVHA VEAVMACREI EQSLQDLTGA TLEEGTGATM SEDEEEPQTI  180
MEAAAAMDMS SNGHDMMGFG PLVPTDSERS LMERVRQELK IELKQGFKSR IGDVREEILR  240
KRRAGKLPGD TTTILKQWWQ QHSKWPYPTE DDKAKLVEET GLQLKQINNW FINQRKRNWH  300
NNSQTSTLKS KRKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294313RKRNWHNNSQTSTLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g76970.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1004270.0FP100427.1 Phyllostachys edulis cDNA clone: bphyem121o22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558936.20.0homeobox protein knotted-1-like 3
SwissprotQ94LW30.0KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLI1HAC30.0I1HAC3_BRADI; Uncharacterized protein
STRINGBRADI1G76970.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-136KNOTTED-like homeobox of Arabidopsis thaliana 7