PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g76940.4.p
Common NameBRADI_1g76940, LOC100838559
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TALE
Protein Properties Length: 610aa    MW: 65152.2 Da    PI: 6.7346
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g76940.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.11.5e-083403771954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yps  ++  L++++gL+ +qV++WF N R +
  Bradi1g76940.4.p 340 FEHflHPYPSDVDKHILSRQTGLSRSQVSNWFINARVR 377
                       554459******************************88 PP
2BELL84.99.4e-28196264472
              BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       elq+ k kL  +leeVd+rY++y+eq++ +++ Feavag  +a+ Yt+lA+k+iSrhFr+L+d ++ q+
  Bradi1g76940.4.p 196 ELQRLKDKLYIMLEEVDRRYRRYCEQMRGLAGGFEAVAGERAAAGYTALASKTISRHFRSLRDGVVAQL 264
                       89999*************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.1E-42126262IPR006563POX domain
PfamPF075261.4E-40132260IPR006563POX domain
PROSITE profilePS5007111.629318381IPR001356Homeobox domain
SMARTSM003891.6E-8321385IPR001356Homeobox domain
CDDcd000861.3E-11321382No hitNo description
SuperFamilySSF466891.03E-16322388IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.2E-27324387IPR009057Homeodomain-like
PfamPF059202.2E-17338377IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 610 aa     Download sequence    Send to blast
MAHDPSFGFA DYLSAADAAA TPTLMPAMDN GAPQELYGLQ TSMELLGMRG MHPAMPGAAS  60
AATAAHCGGS GDAGDSTMRF FLEQHQHQQQ APLSLSLQQH QHQQQHAPVS AWMAHEQDAA  120
AHGHGHGAAW HLRSSRFLFP AQQLLEGFCS LPVDTKSKRT KAAQQQEDAG GGEGSSSSSS  180
CRAPSSAQIQ AMDALELQRL KDKLYIMLEE VDRRYRRYCE QMRGLAGGFE AVAGERAAAG  240
YTALASKTIS RHFRSLRDGV VAQLQAVRKA LGEKDSSSAS KSSPGGMTRG DTPRLKVLDQ  300
CIRQHKAMHQ NGGLMMETHP WRPQRGLPER AVTVLRAWLF EHFLHPYPSD VDKHILSRQT  360
GLSRSQVSNW FINARVRLWK PMVEEMYVEE MKDVDDGAHG QDQVDAAVGN NNPSSGSSSS  420
NLVHADADRA ALLLRAGDGG ERKPTRAQLR HADADIGVHD AGSLASVVNI GAGRMVDSFV  480
VDMDDHHGQF GFDAYNDADA GQSSGFGGGG VSLTLGLQQH ESSRHHGGVN IAFGAPAPAH  540
GGYLFPGDHG QQMGIGVLHS SAGHGHHIQF GEGAGDASSN GGHQHVDDAQ HYRWLSTAGS  600
SSLLPDLTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16327384158Homeobox protein Meis1
4xrs_B2e-16327384158Homeobox protein Meis1
5bng_A2e-16327385159Homeobox protein Meis2
5bng_B2e-16327385159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g76940.4.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562164.10.0homeobox protein BEL1 homolog
RefseqXP_010229286.10.0homeobox protein BEL1 homolog
RefseqXP_014752259.10.0homeobox protein BEL1 homolog
TrEMBLI1HAB90.0I1HAB9_BRADI; Uncharacterized protein
STRINGBRADI1G76940.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-84BEL1-like homeodomain 2