PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g76440.1.p
Common NameBRADI_1g76440
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 287aa    MW: 30796.1 Da    PI: 6.7189
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g76440.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.83e-06159203655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++ r RR+ri ++  eL +l+P       ++l+ ae+L++A ++++ Lq
  Bradi1g76440.1.p 159 SAAARERRKRISEKTGELSRLVPGG-----RRLNTAEMLREAGRHVRVLQ 203
                       56789******************96.....79**********99999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.004153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.67E-7154206No hitNo description
SuperFamilySSF474595.89E-9155210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-7157208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-7159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MALSFFHPLL RHLDAPSMSF LQDESSEVAD ALLGFVHDPA VNSRIDHFLD LNPSPPLPDD  60
DGNIRCGKIP RGAGLGNDAW LNSCSAGNGG SHRALHWSNG DGDHEQAQPA AATPDFLMPL  120
RPPPMQMAPA PLFMRGAAAV ADAKKVAGAT TNGCQSAPSA AARERRKRIS EKTGELSRLV  180
PGGRRLNTAE MLREAGRHVR VLQAQVGVLA LMRTIDIYQR QEDEEIMRAL LASGGVQERL  240
AGEGKCLVPR KLVDAMAEDI AVKSNAVLSR DLARFVDSLP VPEPWL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g76440.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661333.15e-58uncharacterized protein LOC101765829
TrEMBLI1HA570.0I1HA57_BRADI; Uncharacterized protein
STRINGBRADI1G76440.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62013051
Representative plantOGRP59691219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-22bHLH family protein