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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g75120.1.p | ||||||||
Common Name | BRADI_1g75120, LOC100825864 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | LBD | ||||||||
Protein Properties | Length: 179aa MW: 18582.6 Da PI: 6.4895 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.4 | 1.1e-38 | 11 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkCa++Cv+apyf+ae+ +++fa++h++FGasn kll+ +p+ +r++a+++++yeA+ar+rdPvyG+v++i++lqqq++ l++ Bradi1g75120.1.p 11 PCGACKFLRRKCAAECVFAPYFCAEDgASQFAAIHRVFGASNAAKLLSGVPPADRSEAAATVTYEAQARVRDPVYGCVAHIFALQQQVAALQV 103 7***********************9989***************************************************************** PP DUF260 93 elallkee 100 ++a+++++ Bradi1g75120.1.p 104 QVAHARTQ 111 ***99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.866 | 10 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.9E-38 | 11 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MASTATTTGS PCGACKFLRR KCAAECVFAP YFCAEDGASQ FAAIHRVFGA SNAAKLLSGV 60 PPADRSEAAA TVTYEAQARV RDPVYGCVAH IFALQQQVAA LQVQVAHART QAMAAAAAAG 120 GHLLLQQQQG QGWQMGAEHD QSTQSSGCYG GSDGSTSLQQ HAAEVYCFGE QEEGSYSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-36 | 2 | 113 | 2 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-36 | 2 | 113 | 2 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g75120.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT009057 | 1e-103 | BT009057.1 Triticum aestivum clone wdr1f.pk002.l10:fis, full insert mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003558806.1 | 1e-126 | LOB domain-containing protein 29 | ||||
Swissprot | Q9SLB7 | 8e-51 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | I1H9Q0 | 1e-125 | I1H9Q0_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G75120.1 | 1e-126 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10262 | 33 | 44 | Representative plant | OGRP405 | 15 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 3e-45 | lateral organ boundaries-domain 29 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g75120.1.p |
Entrez Gene | 100825864 |