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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g75110.1.p | ||||||||
Common Name | BRADI_1g75110, LOC100836837 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | LBD | ||||||||
Protein Properties | Length: 242aa MW: 25017.7 Da PI: 6.1532 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125 | 3.8e-39 | 9 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkCa++Cv+apyf++eq +++fa++hk+FGasnv+kll++lp +r +a+ ++ yeA+ar+rdPvyG+v++i++lqqq+++l+a Bradi1g75110.1.p 9 PCGACKFLRRKCARGCVFAPYFCHEQgAAHFAAIHKVFGASNVSKLLAHLPLADRAEAAVTVSYEAQARLRDPVYGCVAHIFALQQQVMTLQA 101 7*************************89***************************************************************** PP DUF260 93 elallkee 100 +la+ k++ Bradi1g75110.1.p 102 QLASFKQH 109 **998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.215 | 8 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-37 | 9 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MSMTGFGSPC GACKFLRRKC ARGCVFAPYF CHEQGAAHFA AIHKVFGASN VSKLLAHLPL 60 ADRAEAAVTV SYEAQARLRD PVYGCVAHIF ALQQQVMTLQ AQLASFKQHA AHAQHQQAAA 120 AMAQEDASCY SYPWCNGNDV AAAAAGGGFA GGGNGVYGGN NGVAGAGHDE SAMSVSEMLL 180 GGSAAASDYY YAALEQDGHV AAESSAFGAE ESGGWRSSSS TSGYQDCEDL QSVAYAYLNR 240 S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-35 | 2 | 103 | 4 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-35 | 2 | 103 | 4 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g75110.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF051732 | 1e-111 | EF051732.1 Zea mays rootless concerning crown and seminal lateral roots (rtcs) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003562079.1 | 1e-175 | LOB domain-containing protein 20 | ||||
Swissprot | Q5UG13 | 7e-91 | LBD_ORYSJ; LOB domain-containing protein CRL1 | ||||
TrEMBL | I1H9P9 | 1e-174 | I1H9P9_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G75110.1 | 1e-175 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2501 | 38 | 93 | Representative plant | OGRP405 | 15 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 2e-59 | lateral organ boundaries-domain 29 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g75110.1.p |
Entrez Gene | 100836837 |
Publications ? help Back to Top | |||
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