PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g74432.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 619aa    MW: 72133.1 Da    PI: 8.3511
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g74432.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR138.83e-1293198190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvC....skegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkw 76 
                       +fYn ++ evGF +r  ks+++  +g+  ++++vC    s  g++++ +++             + + + ++ ++   C a +++ +++dg+w
  Bradi1g74432.1.p  93 DFYNLFSWEVGFGIRYGKSRRN-VKGSKCMQELVCgcavSVRGFEASVDDDyepplsnqfitllQGRPKPNTRSSMSMCPALVRLLRSNDGTW 184
                       6*******************99.66667888999933333456666666669*********9987788888889999**************** PP

              FAR1  77 evtkleleHnHela 90 
                       +v++  +eHnH l+
  Bradi1g74432.1.p 185 YVSENMQEHNHGLS 198
                       ***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.1E-993198IPR004330FAR1 DNA binding domain
PfamPF105512.8E-28320413IPR018289MULE transposase domain
PROSITE profilePS509668.407583614IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MEEIGVDVYS PFALDEEGAR DSRGGAVQSD TRSVDSSAVA TPVEGRNDLS GEQDFIEHGV  60
VESATRTDRP ETDSDEPPPA WKKKFDWLAE AYDFYNLFSW EVGFGIRYGK SRRNVKGSKC  120
MQELVCGCAV SVRGFEASVD DDYEPPLSNQ FITLLQGRPK PNTRSSMSMC PALVRLLRSN  180
DGTWYVSENM QEHNHGLSRT CGEKLHWPSH RHIDKYSKDA VKQLRENNVP LGKVYIIIGS  240
MFGRMENVPF TKRSLRMLCG KMGREQADHD VQKTMAEFAR LKTTDPDFDY TVEVDEDSPV  300
KTLIWSSGRS RHQYHHFGDV VTFDMTYKTN LYDMPFGLFV GVNNHFQSII FGGVLMREEK  360
IESFVWVFRE FVRMMGRKHP ETILTNRARA MEVAIRRVFP DTTHRWCKWH VLRKAKEQLG  420
PYYTKQSDFR AAFHKVVNEM LAVDEFERAW HLVLRQYNLE NHPYLIQVYE CQSKWAKPFF  480
SGKFCARSPM HVFVKQYGKL QHARESEESF QERRTKLVGV VPRMNLPIKK HASRVYTRAM  540
FEVFWKILYE SGSYEVTELL PNKLYQARHV HGEPREKWYR IDYQVRVDDK GNSYNCKCGL  600
FEHMGMLCCH ALKVWFWM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g74432.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233362.20.0LOW QUALITY PROTEIN: protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2K2DV470.0A0A2K2DV47_BRADI; Uncharacterized protein
STRINGEMT285400.0(Aegilops tauschii)
STRINGPavir.J04547.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.13e-62FAR1-related sequence 5