PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g74350.2.p
Common NameBRADI_1g74350
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 341aa    MW: 38973.1 Da    PI: 5.0242
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g74350.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.92.8e-32401302101
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+++++ d++++ ++sw + gnsfvv+d++ fa  +Lp+ Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+++ll
  Bradi1g74350.2.p  40 FLTKTFDLVADPATDGVVSWGRAGNSFVVWDPHVFAAVLLPRSFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFIRGQRQLL 123
                       9****************************************************************999.........**************** PP

                       XXXXXXX CS
      HSF_DNA-bind  95 ekikrkk 101
                       + ikr+k
  Bradi1g74350.2.p 124 KMIKRRK 130
                       *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.7E-3636129IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.94E-3436129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-5736129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-184063IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-2940129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-187890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.8E-1891103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MMEHAVLPVP GRVKEEWSPE EEEEAPRPME GLHETGPPPF LTKTFDLVAD PATDGVVSWG  60
RAGNSFVVWD PHVFAAVLLP RSFKHNNFSS FVRQLNTYGF RKIDPDRWEF ANEGFIRGQR  120
QLLKMIKRRK PLPYLPSSQQ QVLGSCLEVG QFGMDEEIEI LKRDKNALLA EVVKLRHDQQ  180
STRADMRAME ERLHLAEQKQ LQMMGFLARA MQNPDLFLQL IEQQDKWKDD ASLKRRRSID  240
MAPFLSPREA TQNEQHKSTI LSEPREFAVP NQPGFSELEN LALSIQGIGK GTKDDKGCQN  300
QVSGEVELTD DFWEELLSEG MKDESGMPEP ETRRPRYVDA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-253812918120Heat shock factor protein 1
5hdg_A2e-25381298110Heat shock factor protein 1
5hdn_A2e-25381298110Heat shock factor protein 1
5hdn_B2e-25381298110Heat shock factor protein 1
5hdn_C2e-25381298110Heat shock factor protein 1
5hdn_D2e-25381298110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122128LKMIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g74350.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0611930.0KF061193.1 Triticum aestivum heat shock factor HsfA2d (HSFA2d) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024314977.10.0LOW QUALITY PROTEIN: heat stress transcription factor A-2d
SwissprotQ8H7Y61e-179HFA2D_ORYSJ; Heat stress transcription factor A-2d
TrEMBLA0A0Q3HLG00.0A0A0Q3HLG0_BRADI; Uncharacterized protein
STRINGBRADI1G74350.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.13e-91heat shock transcription factor A6B