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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g72960.2.p | ||||||||
Common Name | BRADI_1g72960, LOC100842793 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NF-YA | ||||||||
Protein Properties | Length: 256aa MW: 28095.1 Da PI: 9.5556 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 106.8 | 1.8e-33 | 148 | 204 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rakle+e+kl ksrkpylheSRh hA++R+Rg+gGrF Bradi1g72960.2.p 148 EEPIYVNAKQYHAILRRRQLRAKLEAENKL-VKSRKPYLHESRHLHAMKRARGTGGRF 204 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 4.3E-38 | 146 | 207 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.916 | 147 | 207 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 7.9E-29 | 149 | 204 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.2E-24 | 150 | 172 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 152 | 172 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.2E-24 | 181 | 204 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MLSSSLNSKA RVEFHDMRRK EDMHENGTIM IQFGHQVPNY DSSASDSPQE VSGMSEGSHN 60 EQNEQSGRRD GYTNSDEGKM MSALSLGNSE TTYAQPKPDR THPFAVAYPY ADPFYGGAYG 120 SHAVMHPQIV GMVPSSRVPL PIEQAAAEEP IYVNAKQYHA ILRRRQLRAK LEAENKLVKS 180 RKPYLHESRH LHAMKRARGT GGRFLNSKQQ PEGSSGSDAS TRAGHSGIPA NGGMFSKHDH 240 TLSSGDLQYR VRGGA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 3e-23 | 148 | 210 | 2 | 64 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g72960.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003558692.1 | 1e-178 | nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | A0A0Q3HKF3 | 0.0 | A0A0Q3HKF3_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G72960.1 | 1e-177 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1373 | 38 | 121 | Representative plant | OGRP680 | 16 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14020.1 | 9e-42 | nuclear factor Y, subunit A6 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g72960.2.p |
Entrez Gene | 100842793 |