 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Bradi1g71930.1.p |
| Common Name | BRADI_1g71930, LOC100821748 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 316aa MW: 34112.7 Da PI: 4.7102 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bradi1g71930.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 57.7 | 1.9e-18 | 56 | 107 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++ eq+++Le+ Fe +++++ e+++++A+ l L+ rqV vWFqNrRa++k
Bradi1g71930.1.p 56 RRLALEQVRALERSFEVDNKLDPERKARIARDLALQPRQVAVWFQNRRARWK 107
467789*********************************************9 PP
|
| 2 | HD-ZIP_I/II | 125.9 | 1.8e-40 | 54 | 145 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
kkrrl+ eqv++LE+sFe ++kL+perK+++ar+L lqprqvavWFqnrRAR+ktkqlE+d++aL++++dal+++ ++L++++++L++e++e
Bradi1g71930.1.p 54 KKRRLALEQVRALERSFEVDNKLDPERKARIARDLALQPRQVAVWFQNRRARWKTKQLERDFNALRARHDALRSDCDALRRDKDALAAEIRE 145
9**************************************************************************************99986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 316 aa
Download sequence Send
to blast |
MKRQSKRLTS GGQESPEPGD QSLLPPYMEH DEADLEEEDE EEERGSLSCG LGGKKRRLAL 60
EQVRALERSF EVDNKLDPER KARIARDLAL QPRQVAVWFQ NRRARWKTKQ LERDFNALRA 120
RHDALRSDCD ALRRDKDALA AEIRELREKL PKPEAAAVKS EACIEAELRQ ATAVGAAVCN 180
NNKDGSSDSD SSVVFNDEAS PCPYSGSAAV FEQPGGGFMG FGAPTFLDSS AAATGGCSSS 240
LLPMLETKWP GAYGSYDAGK SGGGYGFTEE WLAGTDAIGN DAGAGFFADE HVSSLNFGWC 300
GSGAEGFDLH GYCKK*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 101 | 109 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK353965 | 1e-125 | AK353965.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1004B20. |
