PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g71740.1.p
Common NameBRADI_1g71740, LOC100844506
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 288aa    MW: 31226.1 Da    PI: 6.6234
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g71740.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.7e-19115164255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ aeeAa a++aa+ +l+g
  Bradi1g71740.1.p 115 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDAAEEAALAYDAAAFRLRG 164
                       59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.97E-20114174No hitNo description
PROSITE profilePS5103223.248115172IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-22115173IPR016177DNA-binding domain
SMARTSM003803.4E-37115178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-32115173IPR001471AP2/ERF domain
PRINTSPR003671.4E-10116127IPR001471AP2/ERF domain
PfamPF008471.2E-13116164IPR001471AP2/ERF domain
PRINTSPR003671.4E-10138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MATTVDWRSC NPDLLAATYY NTQESRDVMQ AALAPSMGLQ GAMAPTISFS SSYPCSGLEQ  60
SASYFTPAQI LQLQSQLHQR HVRRAPGAAM PAVPQPMKRH GVAALPARPA AASKLYRGVR  120
QRHWGKWVAE IRLPRNRTRL WLGTFDAAEE AALAYDAAAF RLRGDSARLN FPELRRGGAH  180
HGPPLHPAID AKLRAICDLP PQQSQSDATP TPSSLMPDVV KSEFFPGCCS GSESSSSGDG  240
EVSSTGSSDV VPEMQLLDFS EAPWDESESF VLRKYPSVEI DWDAILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-20111172163ATERF1
3gcc_A6e-20111172163ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g71740.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558614.10.0ethylene-responsive transcription factor ERF060
TrEMBLI1H8Q40.0I1H8Q4_BRADI; Uncharacterized protein
STRINGBRADI1G71740.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.19e-44ERF family protein