PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g69197.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 696aa    MW: 75187.9 Da    PI: 5.3398
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g69197.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11526574355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++iN+++  L++l+P +    +k   Ka++L + ++Y++sLq
  Bradi1g69197.1.p 526 NNHSLAERFRREKINERMKHLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 574
                       58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500539.504185IPR000626Ubiquitin domain
Gene3DG3DSA:3.10.20.904.6E-7392No hitNo description
CDDcd001960.003041682No hitNo description
SuperFamilySSF813835.36E-12327383IPR001810F-box domain
PROSITE profilePS5018110.451327373IPR001810F-box domain
Gene3DG3DSA:1.20.1280.505.7E-10330390No hitNo description
SMARTSM002560.0071333373IPR001810F-box domain
SuperFamilySSF474591.7E-17521590IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-11521578No hitNo description
PROSITE profilePS5088815.847523573IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-18523589IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-9526574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10529579IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MKLRLRSMDA RGGVAETHRV QLPDTATLSD VKAFLAAKLS DAQPVPAESV RLSLNRSEEL  60
LSPDPSATLV ALGLASGDLL HFTLSPLRSH PPPPQALPRN PSPDAIAISG IVACSTSPGE  120
AEPASSSPPS TLRLEPTLPV VSDSPDVVMA EAVDAAKSSP SFVIGLLKRE MEAENAGSTE  180
ATVIHRFIIA LHAALVDAGF LAANPPGCSL GFLKDWASGA LPTLTVKYTL PEIVSVLPVA  240
EEGKIVVLNY SLMPNFVMIY GCVPGAQSEV HRLCLELPKL APLLYLDSND VGEVEEKEIL  300
DLWRVLKDEM CLPLMVSLCR LNGLPLPPCL MALPGDLKAK ILEFVPGVDL ARVECTCKEL  360
GDLAADDNLW KTKCELEFKA SQQQLKQKRK LASGAIKEGM YSPPCTASGN DGEQGFTAGA  420
NPIALLDHAM DFDEHMLFPM HNVGMQDGVQ FYNPTSGTEL SRNMSMEKCL KGGKRKGSGE  480
GSSSMHSQEG TGAVSKREVN SEKAGDAESN REDYVHIRAK RGQATNNHSL AERFRREKIN  540
ERMKHLQDLV PGCNKITGKA MMLDEIINYV QSLQRQVEFL SMKLSAVSPE LNCDLDFQDI  600
LCPQDARSAF PGYGPRLSNV HPNLYRASQQ GLSRPELYGS SPNPANVHLA RTAQLSAFPQ  660
RSVVWDEELR NIGSVVFPSD AGTSSLENSD PMKVE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g69197.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558438.10.0F-box protein SKIP22-like
TrEMBLA0A2K2DU680.0A0A2K2DU68_BRADI; Uncharacterized protein
STRINGPavir.J05268.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45362933
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.13e-44bHLH family protein