|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Bradi1g69150.1.p |
Common Name | BRADI_1g69150, LOC100839337 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
Family |
HD-ZIP |
Protein Properties |
Length: 276aa MW: 29736.3 Da PI: 6.7769 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Bradi1g69150.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 56.7 | 4.2e-18 | 109 | 163 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tkeq Le+ F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k
Bradi1g69150.1.p 109 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 163
788899***********************************************98 PP
|
2 | HD-ZIP_I/II | 125.4 | 2.6e-40 | 109 | 198 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++e +eLr +l
Bradi1g69150.1.p 109 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQRELHELR-AL 198
69*************************************************************************************9.55 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 276 aa
Download sequence Send
to blast |
MAQEEVHDAG LALGLSLGGG GGGDSSRRRR REASSSQQCP LEPSLTLSMP DDAATLSGGG 60 VSSMSAVKRE RAEEEEEEEA AEMVSSTALQ AAFGGAGAGA EEDDDGSTRK KLRLTKEQSA 120 LLEDRFKEHS TLNPKQKVAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEFLKRCCEN 180 LTEENRRLQR ELHELRALKF APPPPPPPLS AAAAPPPFYM QLPAATLTIC PSCERLGGST 240 AANATNNTSK AVDSDVRPKG GTHHFFNPFT HSAAC*
|
Nucleic Localization
Signal ? help
Back to Top |
|
No. |
Start |
End |
Sequence |
1 | 107 | 113 | TRKKLRL |
2 | 157 | 165 | RRARTKLKQ |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | FP097788 | 1e-154 | FP097788.1 Phyllostachys edulis cDNA clone: bphylf059k15, full insert sequence. |