PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g66345.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 271aa MW: 28699.3 Da PI: 8.2849 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.5 | 0.00055 | 156 | 194 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +R +++ +++ L++l+ + +K + a++L +A +I+sL Bradi1g66345.2.p 156 KRSQKLGDKITALQQLVSPY-----GKTDTASVLHEAAACIRSL 194 6889999**********999.....9****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.89 | 145 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-8 | 156 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.4E-5 | 156 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MWNCSAPSSL LLPFSDDYVK CESSTSSTGT AGFDKILAAD YDLCHRMSLP PPSFQSLPAP 60 TLFATRSSES YFGTGDSLTY NGPAFMQFSY TQPTPAANHL VRWTAAGGEP MTGEGSSFRG 120 SKRLKTTAAA ATTQGPQHRL QCRAKPRNQA MKAPCKRSQK LGDKITALQQ LVSPYGKTDT 180 ASVLHEAAAC IRSLHDQIQI LAAPYPGLSS SPSPSSSQDA GEEPGAASLR RRGLCLMPLS 240 PAVASLVSEA ARGRGHAHTD MEEDAWFGAL * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g66345.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010228790.1 | 0.0 | uncharacterized protein LOC100826940 isoform X2 | ||||
TrEMBL | A0A2K2DTQ3 | 0.0 | A0A2K2DTQ3_BRADI; Uncharacterized protein | ||||
STRING | Pavir.J38538.1.p | 1e-105 | (Panicum virgatum) | ||||
STRING | MLOC_43396.1 | 1e-104 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3758 | 24 | 26 | Representative plant | OGRP14126 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19500.1 | 6e-22 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g66345.2.p |