PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g61620.1.p
Common NameBRADI_1g61620, LOC100842924
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 301aa    MW: 34051.2 Da    PI: 6.4542
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g61620.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.55.7e-35331252103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d+ +++++sw e++ +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg k+ll
  Bradi1g61620.1.p  33 FLTKTYQLVDDPCTDHVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKHLL 116
                       9****************************************************************999.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i+r+ks+
  Bradi1g61620.1.p 117 SEIHRRKSS 125
                       ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.3E-5729122IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.98E-3330122IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.105.2E-3730122IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.8E-3133122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-193356IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-197183IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407296IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-198496IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAFLVERCSG EMVVSSSSME HMAAAAKPVP APFLTKTYQL VDDPCTDHVV SWGEDEATFV  60
VWRPPEFARD LLPNYFKHNN FSSFVRQLNT YGFRKIVADR WEFANEFFRK GAKHLLSEIH  120
RRKSSCSSSQ PLPPPPPQPY LSLFSPPPHH HPQLAQGAYH RFQEEEEYSS SPADSGGDLL  180
ATLSEDNRQL RRRNSLLLSE LAHMRKLYND IIYFLQNHVE PVPRQQPASC YTRLVELDHA  240
GGPVVVPQAQ AQARQRGDDD AAVKLFGVRL DDSKKRRVLL VEEGDHGDHG DEHLEISNEA  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-222412712125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g61620.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0639521e-112AK063952.1 Oryza sativa Japonica Group cDNA clone:001-123-F07, full insert sequence.
GenBankAK0993541e-112AK099354.1 Oryza sativa Japonica Group cDNA clone:J033042P04, full insert sequence.
GenBankAY3444941e-112AY344494.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561606.10.0heat stress transcription factor B-4d
SwissprotQ10KX81e-114HFB4D_ORYSJ; Heat stress transcription factor B-4d
TrEMBLA0A0Q3LF320.0A0A0Q3LF32_BRADI; Uncharacterized protein
STRINGBRADI1G61620.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-71heat shock transcription factor B4