PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g57870.1.p
Common NameLOC104582322
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 360aa    MW: 39885.6 Da    PI: 4.6464
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g57870.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.33.4e-121864349
                      --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      i +++ r +tf kRr g++K A  L  L++a+vavi+   +g+++ +
  Bradi1g57870.1.p 18 IGDNRARDITFYKRRSGLFKSATDLHSLTNARVAVILETDNGRMHSF 64
                      678899***************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-7167IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.044868IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-81030IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-141179IPR002100Transcription factor, MADS-box
PfamPF003199.5E-161864IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-83045IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-84566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MLRGRVPRRE RRLGVQYIGD NRARDITFYK RRSGLFKSAT DLHSLTNARV AVILETDNGR  60
MHSFGTPFAD PIVDAFLSRD PPIEPLTDQA TTDRITLLQS EVARLDMENT MEVSKAKLTT  120
KRVKEIQDEN PGMGVNLLLA RKEDLNLEDL TKLFNELSCV EQNIARRVPP LHRVHEQNGP  180
SMSTYHPQVP SWGLMATLPS SLHSSSSDLL MDHVLAPNFP VQVPETLQPV PPAMSPPILN  240
QVQELPSPLQ SHLQIQASPD NVVEPPQNNI NPDSTFEPIE EASPLLDYTG GDNFGIDDPF  300
GYEHWSYALS DLPYYTSFLE TFGTDVGQAE MGNGGWVNAP PESSSDRGDA SNSSDRKTS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g57870.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010230083.10.0floral homeotic protein GLOBOSA
TrEMBLI1H3V60.0I1H3V6_BRADI; Uncharacterized protein
STRINGBRADI1G57870.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30892276
Representative plantOGRP9531413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-11AGAMOUS-like 62