PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g55427.2.p
Common NameBRADI_1g55427, LOC100831805
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 287aa    MW: 30768.9 Da    PI: 6.3503
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g55427.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08137181554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  Bradi1g55427.2.p 137 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 181
                       99***********************7.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-15130191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.34E-10130186No hitNo description
PROSITE profilePS5088815.77132181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-14134191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-6137181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9138187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAGQPPPGAE DDFLDHFFSI PSSFPAAGQG GAPAADGDHH PFPLALSLEA AAEASGGARR  60
LQDGPDVARA ERDPVQLAGL FAPVFAGAAP HLRPAPPSQV FHAQPRLGEG AMVPQPHQPP  120
APRPKQRARR GQATDPHSIA ERLRRERIAE RMRALQELVP NTNKTDRAAM LDEILDYVKF  180
LRLQVKVLSM SRLGGAGAVA QLIADIPLSG EEASDSGGKQ QIWEKWSTDG TEKQVAKLME  240
EDIGAAMQFL QSKALCMMPI SLAMAIYDTQ HLQDGHSMKP EPNSHS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141146RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g55427.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0960750.0FP096075.1 Phyllostachys edulis cDNA clone: bphyem116n19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228286.10.0transcription factor UNE12 isoform X2
SwissprotO227685e-74UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A0Q3HCK30.0A0A0Q3HCK3_BRADI; Uncharacterized protein
STRINGBRADI1G55427.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.36e-61bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]