PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g54111.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 663aa MW: 72394 Da PI: 6.2981 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.5 | 1.1e-13 | 476 | 522 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h Er+RR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ Bradi1g54111.3.p 476 NHVLQERKRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 522 7999**********************8.....8*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 2.0E-50 | 8 | 211 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.111 | 472 | 521 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.22E-18 | 475 | 541 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.3E-11 | 476 | 521 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-17 | 476 | 537 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.51E-14 | 476 | 526 | No hit | No description |
SMART | SM00353 | 2.4E-16 | 478 | 527 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 663 aa Download sequence Send to blast |
MASCSEVHKS LQAVAQGLRW TYALLWQLCP DQGALLWAEG HYNGAIKTRK TVQQAHGAPA 60 PAPAEAADQA ARHRSRQLKE LFESLAREAA AAGGMMTGCR VDAVQAESAA RRPTAALAPE 120 DLTETEWFYL MCASYSFPPH VGLPGRAFAK GGHVWLCRAN EVDSKVFSRA ILAKSAGIQT 180 VVCIPIVDGV LEIGTTENVK EDISLVQYAM SIIMDQQDIQ MIPTISEHST SDKICHMYQQ 240 SFQTQRKIHG GQENEMEHDD DDIGAECASG SGTNAGRNYS QDTPLNIVGN TDDQETPNAG 300 SSELMQLEIP EKVRDGCSSN LDDEIQMLMV CQNSNDQSDF QRQDEPCDSW HFLYEELCSG 360 YPQSSAGENQ DMVLQPENAH YTETVMSILQ RNTRRQAAGT STRSYVAASH QSSFSTWHPT 420 MLQQGRTATG AGGTTPQRML RSVLFNNAAA SGHGKPADDF PRGGGPRREA ADLSANHVLQ 480 ERKRREKLNE RFIILRSLVP FVTKMDKASI LGDTIEYVKQ LRSRIQDLES SSTRQQQQVV 540 HGCGGLTAAA DQARSAKRKL ATREGSSASS SSAPSSSSAE VQVSIIESDA LLELRCPDRR 600 GLLLRAMQAL QDQLRLEITA VRASSDDGVL LAELRAKVRE VHGRRSSISE VKRAIHLIIS 660 SG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rru_A | 5e-15 | 11 | 207 | 52 | 225 | Transcription factor MYC3 |
4ywc_A | 5e-15 | 11 | 207 | 52 | 225 | Transcription factor MYC3 |
4ywc_B | 5e-15 | 11 | 207 | 52 | 225 | Transcription factor MYC3 |
5t0f_A | 4e-15 | 7 | 206 | 9 | 185 | Transcription factor MYC3 |
5t0q_A | 4e-15 | 7 | 206 | 9 | 185 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 480 | 485 | ERKRRE |
2 | 481 | 486 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g54111.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024312732.1 | 0.0 | basic helix-loop-helix protein A isoform X1 | ||||
TrEMBL | A0A2K2DRC8 | 0.0 | A0A2K2DRC8_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G54070.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8863 | 30 | 36 |
Representative plant | OGRP5226 | 11 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09820.1 | 2e-64 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g54111.3.p |